JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4F21_chr8_161086_172024	0/0	c0005	939	4	0	0	4	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0006	939	3	3	0	0	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0007	939	3	2	1	0	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0008	939	1	1	0	0	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0011	939	1	0	1	0	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F29_chr1_445740_456678	0/0	c0001	939	5	4	0	0	0	1	copy fasta	OR4F29	chr1	445740	456678
OR4F29_chr1_445740_456678	0/0	c0002	939	1	0	0	0	0	1	copy fasta	OR4F29	chr1	445740	456678
OR4F29_chr1_445740_456678	0/0	c0003	939	1	1	0	0	0	0	copy fasta	OR4F29	chr1	445740	456678
OR4F29_chr1_445740_456678	0/0	c0004	939	1	1	0	0	0	0	copy fasta	OR4F29	chr1	445740	456678
OR4F3_chr5_181362268_181373262	0/1	c0001	939	117	9	29	62	4	12	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	c0002	939	5	0	0	5	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	c0003	940	3	0	0	3	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	c0004	940	2	2	0	0	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	c0005	939	1	0	0	1	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	c0006	939	1	1	0	0	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	c0007	939	1	0	1	0	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F5_chr1_60419_76585	0/0	c0001	981	90	6	10	67	1	6	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0002	981	41	1	5	35	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0003	981	18	10	5	0	1	2	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0004	981	15	5	3	0	3	4	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	1/0	c0005	981	15	12	1	0	1	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0006	981	10	0	1	7	0	2	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0007	981	9	0	0	8	0	1	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0008	981	3	0	1	0	0	2	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0009	981	2	2	0	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0010	981	2	0	0	2	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0011	981	1	1	0	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0012	981	1	0	1	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0013	981	1	0	0	0	0	1	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0014	981	1	0	1	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0015	981	1	0	1	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0016	981	1	0	0	1	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0017	981	1	1	0	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0018	981	1	0	0	1	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0019	981	1	0	0	1	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	c0020	981	1	0	1	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F6_chr15_101798509_101811887	1/0	c0001	939	340	77	78	128	16	40	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	c0002	939	10	10	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	c0003	939	8	0	0	8	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	c0004	939	4	4	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	c0005	939	3	0	1	0	2	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	c0006	939	2	2	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	c0007	939	1	0	1	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/1	c0008	939	1	0	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR4F6	chr15	101798509	101811887