JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RCOR3_chr1_211254366_211321385	1/0	c0001	1662	267	65	42	115	9	35	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/1	c0002	1662	44	7	12	18	1	5	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	c0003	1662	10	10	0	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	c0004	1662	2	2	0	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	c0005	1662	1	0	0	1	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCSD1_chr1_167625232_167713696	1/1	c0001	1251	335	81	53	147	14	38	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0002	1251	3	3	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0003	1251	2	1	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0004	1251	2	2	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0005	1251	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0006	1251	1	0	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0007	1251	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0008	1251	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0009	1251	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0010	1251	1	0	1	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0011	1251	1	0	0	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	c0012	1251	1	1	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCVRN_chr17_9891320_9910271	1/1	c0001	603	465	90	87	222	16	48	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	c0002	603	9	9	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	c0003	603	2	0	1	0	1	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	c0004	603	2	0	0	2	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	c0005	603	1	0	0	0	1	0	copy fasta	RCVRN	chr17	9891320	9910271
RCVRN_chr17_9891320_9910271	0/0	c0006	603	1	1	0	0	0	0	copy fasta	RCVRN	chr17	9891320	9910271
RD3L_chr14_103935426_103947529	1/1	c0001	597	396	90	64	187	12	41	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	c0002	597	19	0	4	15	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	c0003	597	16	2	9	0	4	1	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	c0004	597	5	0	3	0	2	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	c0005	597	2	1	1	0	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	c0006	597	1	1	0	0	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	c0007	597	1	0	1	0	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3_chr1_211471522_211497162	1/1	c0001	588	404	78	70	195	14	45	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	c0002	588	6	6	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	c0003	588	4	4	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	c0004	588	1	0	0	1	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	c0005	588	1	0	0	0	0	1	copy fasta	RD3	chr1	211471522	211497162
RDH10_chr8_73289602_73330281	1/1	c0001	1026	389	88	73	185	16	25	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	c0002	1026	3	2	1	0	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	c0003	1026	2	0	0	0	0	2	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	c0004	1026	1	0	0	0	0	1	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	c0005	1026	1	0	0	1	0	0	copy fasta	RDH10	chr8	73289602	73330281
RDH11_chr14_67671800_67700764	1/1	c0001	957	434	94	80	201	18	39	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	c0002	957	1	1	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	c0003	957	1	0	0	1	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	c0004	957	1	1	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	c0005	957	1	0	0	0	0	1	copy fasta	RDH11	chr14	67671800	67700764
RDH12_chr14_67696886_67739451	1/1	c0001	951	374	80	70	167	14	41	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	c0002	951	52	9	11	27	2	3	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	c0003	951	5	0	0	5	0	0	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	c0004	951	1	0	1	0	0	0	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	c0005	951	1	0	0	1	0	0	copy fasta	RDH12	chr14	67696886	67739451