JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLFN13_chr17_35430096_35453766	0/0	c0051	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0052	2694	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0053	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0054	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0055	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0056	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0057	2694	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0058	2694	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0059	2694	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0060	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0061	2694	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0062	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0063	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0064	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0065	2694	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0066	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0067	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0068	2694	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0069	2694	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN14_chr17_35538985_35565819	0/0	c0001	2739	115	13	23	63	4	12	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0002	2739	100	10	15	63	4	8	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0003	2739	49	15	1	31	0	2	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	1/0	c0004	2739	40	0	7	26	1	5	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/1	c0005	2739	33	5	10	4	5	8	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0006	2739	14	13	1	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0007	2739	14	14	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0008	2739	11	0	4	0	2	5	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0009	2739	7	5	2	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0010	2739	6	2	3	1	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0011	2739	6	0	1	5	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0012	2739	5	5	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0013	2739	5	0	0	5	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0014	2739	4	0	0	4	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0015	2739	3	3	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0016	2739	2	2	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0017	2739	2	0	0	2	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0018	2739	1	0	1	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0019	2739	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0020	2739	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0021	2739	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0022	2739	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0023	2739	1	0	0	1	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0024	2739	1	0	0	0	0	1	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0025	2739	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0026	2739	1	0	0	0	0	1	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0027	2739	1	0	0	1	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0028	2739	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN14_chr17_35538985_35565819	0/0	c0029	2739	1	1	0	0	0	0	copy fasta	SLFN14	chr17	35538985	35565819
SLFN5_chr17_35238072_35278655	1/1	c0001	2676	252	52	38	132	4	24	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0002	2676	70	15	13	35	0	7	copy fasta	SLFN5	chr17	35238072	35278655