JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMCR8_chr17_18310293_18333056	0/0	c0021	2814	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMDT1_chr22_42074700_42089284	0/1	c0001	324	392	94	74	163	16	44	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	c0002	324	1	0	0	1	0	0	copy fasta	SMDT1	chr22	42074700	42089284
SMG1_chr16_18799860_18931408	0/0	c0001	10986	113	18	11	67	5	12	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0002	10986	63	13	16	18	5	11	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0003	10986	25	25	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/1	c0004	10986	18	12	3	0	1	1	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0005	10986	14	0	5	6	0	3	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0006	10986	12	0	0	12	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0007	10986	9	3	3	0	1	2	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	1/0	c0008	10986	9	1	7	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0009	10986	4	4	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0010	10986	3	1	2	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0011	10986	2	0	0	2	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0012	10986	2	0	1	0	0	1	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0013	10986	2	2	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0014	10986	2	0	1	0	0	1	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0015	10986	2	2	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0016	10986	2	2	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0017	10986	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0018	10986	1	0	1	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0019	10986	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0020	10986	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0021	10986	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0022	10986	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0023	10986	1	0	1	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0024	10986	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0025	10986	1	0	1	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0026	10986	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0027	10986	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0028	10986	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0029	10986	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0030	10986	1	0	1	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0031	10986	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0032	10986	1	0	0	0	0	1	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0033	10986	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	c0034	10986	1	0	1	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG5_chr1_156244224_156287825	1/1	c0001	3051	258	62	47	113	10	24	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0002	3051	87	6	22	40	4	15	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0003	3051	7	7	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0004	3051	2	2	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0005	3051	2	2	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0006	3051	2	2	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0007	3051	2	2	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0008	3051	1	0	0	1	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0009	3051	1	1	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0010	3051	1	1	0	0	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0011	3051	1	0	0	1	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0012	3051	1	0	0	1	0	0	copy fasta	SMG5	chr1	156244224	156287825
SMG5_chr1_156244224_156287825	0/0	c0013	3051	1	0	1	0	0	0	copy fasta	SMG5	chr1	156244224	156287825