JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SP140_chr2_230220736_230318215	0/1	c0001	2604	255	55	41	123	3	32	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0002	2604	30	2	7	17	2	2	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0003	2604	16	14	0	1	0	1	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0004	2604	14	2	10	0	0	2	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0005	2604	11	0	5	0	5	1	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0006	2604	11	6	1	0	1	3	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	1/0	c0007	2604	9	0	2	1	4	1	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0008	2604	5	0	2	1	1	1	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0009	2604	4	4	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0010	2604	2	0	0	2	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0011	2604	2	0	0	1	1	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0012	2604	2	2	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0013	2604	2	2	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0014	2604	1	1	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0015	2604	1	1	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0016	2604	1	0	0	0	0	1	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0017	2604	1	0	0	0	1	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0018	2604	1	1	0	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0019	2604	1	0	1	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP140_chr2_230220736_230318215	0/0	c0020	2604	1	0	1	0	0	0	copy fasta	SP140	chr2	230220736	230318215
SP1_chr12_53375176_53421446	1/1	c0001	2358	217	52	50	71	14	28	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0002	2358	96	21	14	49	2	10	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0003	2358	4	4	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0004	2358	2	0	0	2	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0005	2373	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0006	2358	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0007	2358	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0008	2358	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0009	2358	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0010	2358	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	c0011	2358	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP2_chr17_47891236_47933957	0/1	c0001	1842	173	32	25	89	9	17	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	1/0	c0002	1842	122	30	35	32	6	18	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0003	1842	32	2	16	7	1	6	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0004	1842	19	19	0	0	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0005	1842	5	4	0	1	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0006	1842	4	3	1	0	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0007	1842	4	0	0	4	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0008	1842	3	0	0	3	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0009	1842	1	0	0	0	0	1	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0010	1842	1	0	1	0	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0011	1842	1	0	0	1	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	c0012	1842	1	0	0	1	0	0	copy fasta	SP2	chr17	47891236	47933957
SP3_chr2_173895775_173970373	1/1	c0001	2346	280	81	69	80	12	36	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	c0002	2346	58	0	5	48	1	4	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	c0003	2346	4	0	0	4	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	c0004	2346	4	4	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	c0005	2346	3	3	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	c0006	2346	2	0	0	2	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	c0007	2346	2	2	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373