JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPDYA_chr2_28805834_28855610	0/0	c0003	942	5	4	1	0	0	0	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	c0004	942	1	0	0	1	0	0	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	c0005	942	1	0	0	1	0	0	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	c0006	942	1	0	1	0	0	0	copy fasta	SPDYA	chr2	28805834	28855610
SPDYC_chr11_65165233_65178374	1/1	c0001	825	437	92	73	210	18	42	copy fasta	SPDYC	chr11	65165233	65178374
SPDYC_chr11_65165233_65178374	0/0	c0002	825	2	2	0	0	0	0	copy fasta	SPDYC	chr11	65165233	65178374
SPDYC_chr11_65165233_65178374	0/0	c0003	825	2	0	0	0	0	2	copy fasta	SPDYC	chr11	65165233	65178374
SPDYC_chr11_65165233_65178374	0/0	c0004	825	1	0	1	0	0	0	copy fasta	SPDYC	chr11	65165233	65178374
SPDYE10_chr7_73099008_73160431	0/0	c0001	798	77	20	17	30	2	8	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0002	798	60	1	17	34	1	7	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0003	798	22	6	3	8	1	4	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0004	798	18	7	3	6	1	1	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0005	798	14	3	3	5	0	3	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0006	798	14	13	1	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0007	798	2	2	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0008	798	2	2	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0009	798	2	2	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0010	798	1	0	0	0	0	1	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0011	798	1	0	0	1	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0012	798	1	0	0	0	1	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0013	798	1	0	1	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	c0014	798	1	0	1	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE11_chr7_73042862_73062911	0/0	c0001	798	8	4	2	2	0	0	copy fasta	SPDYE11	chr7	73042862	73062911
SPDYE12_chr7_74899289_74920078	1/1	c0001	798	311	86	55	120	8	40	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0002	798	16	0	9	7	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0003	798	8	1	5	1	0	1	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0004	798	6	4	2	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0005	798	2	1	1	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0006	798	2	0	0	0	0	2	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0007	798	1	0	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0008	798	1	0	0	0	0	1	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0009	798	1	0	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0010	798	1	0	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	c0011	798	1	0	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE13_chr7_75275790_75294501	0/0	c0001	798	18	16	0	0	0	2	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE13_chr7_75275790_75294501	0/0	c0002	798	1	1	0	0	0	0	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE13_chr7_75275790_75294501	0/0	c0003	798	1	1	0	0	0	0	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE14_chr7_75302376_75322429	0/0	c0001	798	2	2	0	0	0	0	copy fasta	SPDYE14	chr7	75302376	75322429
SPDYE16_chr7_76526313_76548297	1/0	c0001	1059	132	12	30	66	6	17	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0002	1059	72	19	23	17	4	9	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0003	1059	21	10	5	4	1	1	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0004	1059	14	0	3	10	0	1	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0005	1059	3	3	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0006	1059	3	2	1	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0007	1059	2	2	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0008	1059	2	2	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0009	1059	1	1	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0010	1059	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0011	1059	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0012	1059	1	1	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297