JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRXN1_chr20_641615_658200	0/0	c0007	414	1	0	0	0	0	1	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	c0008	414	1	1	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRY_chrY_2781855_2792682	1/1	c0001	615	107	18	19	49	4	15	copy fasta	SRY	chrY	2781855	2792682
SRY_chrY_2781855_2792682	0/0	c0002	615	17	0	0	17	0	0	copy fasta	SRY	chrY	2781855	2792682
SS18L1_chr20_62138769_62187514	1/0	c0001	1191	254	58	53	99	9	34	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0002	1191	21	13	3	0	0	5	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0003	1191	12	10	2	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0004	1191	5	4	1	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/1	c0005	1191	5	0	3	0	1	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0006	1191	4	4	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0007	1191	3	2	1	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0008	1191	3	0	0	3	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0009	1191	2	0	1	1	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0010	1191	2	0	0	1	0	1	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0012	1191	1	0	1	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0013	1191	1	0	1	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0014	1191	1	1	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	c0015	1258	1	0	0	1	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L2_chr3_42585860_42601934	1/1	c0001	234	387	87	74	166	14	44	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	c0002	234	1	1	0	0	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18_chr18_26011253_26095613	1/1	c0001	1257	299	71	55	127	10	34	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	c0002	1257	6	5	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	c0003	1257	6	5	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	c0004	1257	2	1	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	c0005	1257	1	0	0	1	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	c0006	1257	1	1	0	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	c0007	1257	1	0	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	c0008	1257	1	1	0	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SS18_chr18_26011253_26095613	0/0	c0009	1257	1	0	1	0	0	0	copy fasta	SS18	chr18	26011253	26095613
SSBP1_chr7_141733358_141755488	1/1	c0001	447	415	87	68	198	16	44	copy fasta	SSBP1	chr7	141733358	141755488
SSBP1_chr7_141733358_141755488	0/0	c0002	447	7	0	0	7	0	0	copy fasta	SSBP1	chr7	141733358	141755488
SSBP1_chr7_141733358_141755488	0/0	c0003	447	1	0	0	1	0	0	copy fasta	SSBP1	chr7	141733358	141755488
SSBP1_chr7_141733358_141755488	0/0	c0004	447	1	1	0	0	0	0	copy fasta	SSBP1	chr7	141733358	141755488
SSBP2_chr5_81407804_81756097	0/0	c0001	1110	126	74	19	22	4	7	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	1/1	c0002	1110	79	11	27	24	4	11	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	c0003	1110	1	1	0	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP3_chr1_54220432_54411394	1/1	c0001	1167	258	71	50	85	12	38	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	c0002	1167	10	9	1	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	c0003	1167	3	2	1	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	c0004	1167	3	3	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	c0005	1167	2	2	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	c0006	1167	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	c0007	1167	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	c0008	1167	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	c0009	1167	1	1	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP4_chr19_18414398_18439562	0/0	c0001	1158	157	67	32	34	4	20	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	1/1	c0002	1158	126	16	38	48	6	16	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	c0003	1158	6	6	0	0	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	c0004	1158	3	3	0	0	0	0	copy fasta	SSBP4	chr19	18414398	18439562