JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSPY1_chrY_9461955_9474749	0/0	c0003	927	3	0	1	0	1	1	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	c0004	927	2	1	0	1	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	c0005	927	1	0	0	0	0	1	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	c0006	925	1	0	0	1	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	c0007	927	1	1	0	0	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	c0008	927	1	0	0	1	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	c0009	926	1	0	0	1	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	c0010	927	1	0	0	1	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	c0011	927	1	0	0	1	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY2_chrY_6241223_6254018	0/0	c0001	927	95	11	19	46	4	15	copy fasta	TSPY2	chrY	6241223	6254018
TSPY2_chrY_6241223_6254018	0/0	c0002	927	11	0	0	11	0	0	copy fasta	TSPY2	chrY	6241223	6254018
TSPY2_chrY_6241223_6254018	0/0	c0003	929	1	0	0	1	0	0	copy fasta	TSPY2	chrY	6241223	6254018
TSPY2_chrY_6241223_6254018	0/0	c0004	927	1	1	0	0	0	0	copy fasta	TSPY2	chrY	6241223	6254018
TSPY4_chrY_9332464_9345278	0/0	c0001	930	1	0	0	1	0	0	copy fasta	TSPY4	chrY	9332464	9345278
TSPY4_chrY_9332464_9345278	0/0	c0002	927	1	0	0	1	0	0	copy fasta	TSPY4	chrY	9332464	9345278
TSPY4_chrY_9332464_9345278	0/0	c0003	927	1	0	0	1	0	0	copy fasta	TSPY4	chrY	9332464	9345278
TSPYL1_chr6_116269858_116284930	0/0	c0001	1317	186	11	21	121	7	26	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/1	c0002	1317	107	31	22	44	4	5	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	c0003	1317	44	24	2	9	2	7	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	c0004	1317	39	19	4	10	1	5	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	1/0	c0005	1314	32	4	21	0	3	3	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	c0006	1317	2	0	0	2	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	c0007	1317	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	c0008	1317	1	0	0	0	1	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	c0009	1317	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	c0010	1317	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	c0011	1317	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	c0012	1317	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL2_chrX_53077367_53093540	1/1	c0001	2082	227	68	34	93	11	19	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0002	2083	4	0	1	1	0	2	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0003	2085	4	0	0	4	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0004	2083	4	1	2	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0005	2073	4	0	0	4	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0006	2082	3	3	0	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0007	2085	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0008	2086	1	1	0	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0009	2073	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0010	2083	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0011	2081	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0012	2082	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0013	2088	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0014	2081	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0015	2079	1	0	0	0	0	1	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0016	2082	1	0	1	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0017	2082	1	1	0	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	c0018	2081	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL4_chr6_116244964_116259075	0/0	c0001	1245	167	15	22	103	7	20	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/1	c0002	1245	143	69	11	52	3	7	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0003	1245	37	0	11	21	3	2	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	1/0	c0004	1245	29	4	19	0	3	2	copy fasta	TSPYL4	chr6	116244964	116259075