JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP17L29_chr4_9348638_9360230	0/0	c0029	1593	1	0	1	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0030	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0031	1593	1	0	1	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0032	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0033	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0034	1593	1	1	0	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0035	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0036	1593	1	0	1	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0037	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0038	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0039	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0040	1593	1	1	0	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0041	1593	1	0	1	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0042	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0043	1593	1	0	1	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0044	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0045	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0046	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0047	1593	1	0	1	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0048	1593	1	0	0	0	0	1	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0049	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0050	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0051	1593	1	0	1	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0052	1593	1	0	0	0	0	1	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0053	1593	1	0	0	0	0	1	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0054	1593	1	1	0	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0055	1593	1	1	0	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0056	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0057	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0058	1593	1	1	0	0	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0059	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L29_chr4_9348638_9360230	0/0	c0060	1593	1	0	0	1	0	0	copy fasta	USP17L29	chr4	9348638	9360230
USP17L2_chr8_12131435_12143849	0/0	c0000	0	17	12	0	2	0	3	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0001	1593	55	0	7	43	1	4	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0002	1593	41	4	11	21	1	4	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	1/0	c0003	1593	21	5	5	6	0	4	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0004	1593	8	0	1	7	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0005	1593	6	0	5	0	1	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0006	1593	6	6	0	0	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0007	1593	5	3	1	0	0	1	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0008	1593	3	0	0	3	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0009	1593	3	0	1	0	0	2	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0010	1593	3	3	0	0	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0011	1593	3	3	0	0	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0012	1593	3	0	2	0	1	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0013	1593	3	0	0	3	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0014	1593	2	0	0	2	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0015	1593	2	2	0	0	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0016	1593	1	0	0	1	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	c0017	1593	1	0	0	1	0	0	copy fasta	USP17L2	chr8	12131435	12143849