JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP17L7_chr8_12127417_12139099	0/0	c0000	0	1	0	0	0	0	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/1	c0001	1593	58	1	6	48	1	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0002	1593	49	2	13	27	2	5	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	1/0	c0003	1593	18	3	5	6	0	3	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0004	1593	18	1	7	9	1	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0005	1593	12	8	0	2	0	2	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0006	1593	5	3	1	0	0	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0007	1593	3	0	0	0	0	3	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0008	1593	3	0	0	3	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0009	1593	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0010	1593	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0011	1593	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0012	1593	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0013	1593	2	2	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0014	116	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0015	1593	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0016	1593	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0017	1593	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0018	1593	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0019	1593	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0020	1593	1	0	0	0	0	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0021	1593	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0022	1593	1	0	0	0	0	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0023	1593	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0024	1593	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0025	1593	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0026	1593	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0027	1593	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0028	1593	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0029	1593	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	c0030	1593	1	1	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L8_chr8_7966661_7978253	1/0	c0001	1593	3	2	0	0	0	0	copy fasta	USP17L8	chr8	7966661	7978253
USP18_chr22_18145170_18182397	1/1	c0001	1119	249	45	45	138	2	17	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0002	1119	99	31	20	28	4	16	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0003	1119	9	8	1	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0004	1119	5	0	0	0	0	5	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0005	1119	3	2	0	1	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0006	1119	2	2	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0007	1119	2	2	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0008	1119	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0009	1119	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0010	1119	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0011	1119	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0012	1119	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0013	1119	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	c0014	1119	1	0	0	1	0	0	copy fasta	USP18	chr22	18145170	18182397
USP19_chr3_49103050_49125823	1/1	c0001	4155	222	52	48	68	13	39	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0002	4155	30	1	6	17	3	3	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0003	4155	19	17	2	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	c0004	4155	9	0	0	9	0	0	copy fasta	USP19	chr3	49103050	49125823