JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
VCY1B_chrY_14051227_14061958	0/0	c0003	376	1	0	0	1	0	0	copy fasta	VCY1B	chrY	14051227	14061958
VCY_chrY_13980772_13991473	0/0	c0001	378	121	17	20	64	5	15	copy fasta	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	c0002	378	1	0	0	1	0	0	copy fasta	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	c0003	379	1	1	0	0	0	0	copy fasta	VCY	chrY	13980772	13991473
VDAC1_chr5_133966871_134009975	1/1	c0001	852	370	95	54	172	16	31	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	c0002	852	21	0	0	20	0	1	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	c0003	852	2	0	0	2	0	0	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	c0004	852	1	1	0	0	0	0	copy fasta	VDAC1	chr5	133966871	134009975
VDAC2_chr10_75205796_75236448	1/1	c0001	885	385	81	62	190	14	36	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	c0002	885	10	10	0	0	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	c0003	885	1	1	0	0	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC3_chr8_42386880_42410937	1/1	c0001	852	288	94	22	136	2	32	copy fasta	VDAC3	chr8	42386880	42410937
VDR_chr12_47836537_47909994	0/0	c0001	1284	172	50	27	70	2	23	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	1/1	c0002	1284	94	11	28	44	3	6	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0003	1284	53	22	10	11	4	6	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0004	1284	18	4	7	2	1	4	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0005	1284	3	0	0	0	3	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0006	1284	2	0	0	2	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0007	1284	2	0	0	0	0	2	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0008	1284	2	2	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0009	1284	2	2	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0010	1284	2	0	1	0	1	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0011	1284	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0012	1284	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0013	1284	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0014	1284	1	0	1	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0015	1284	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0016	1284	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0017	1284	1	0	0	0	0	1	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	c0018	1284	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VEGFA_chr6_43765211_43791487	1/1	c0001	1188	384	88	78	163	15	38	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	c0002	1188	56	8	8	29	3	8	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	c0003	1188	4	0	0	4	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	c0004	1188	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	c0005	1188	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFB_chr11_64229584_64244264	1/0	c0001	624	272	84	62	97	5	23	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/1	c0002	624	42	1	7	21	1	11	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0003	624	2	2	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0004	624	2	2	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0005	624	2	0	0	2	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0006	624	1	1	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0007	624	1	0	0	1	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0008	624	1	0	0	1	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0009	624	1	0	1	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0010	624	1	0	0	0	0	1	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0011	640	1	0	0	0	0	1	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0012	624	1	1	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	c0013	624	1	1	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFC_chr4_176678538_176797922	1/1	c0001	1260	220	88	48	46	8	28	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	c0002	1263	2	2	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922