JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BPI_chr20_38299156_38342505	0/0	c0056	1452	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPNT1_chr1_220052482_220094788	1/1	c0001	927	414	89	76	189	15	43	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	c0002	927	4	4	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	c0003	927	1	0	1	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	c0004	927	1	0	0	1	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	c0005	927	1	0	1	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	c0006	927	1	0	0	0	1	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	c0007	927	1	1	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	c0008	927	1	0	0	0	0	1	copy fasta	BPNT1	chr1	220052482	220094788
BPNT2_chr8_56952931_56998867	1/1	c0001	1080	349	72	55	172	10	38	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	c0002	1080	3	3	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	c0003	1080	1	0	1	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	c0004	1080	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	c0005	1080	1	0	0	0	1	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	c0006	1080	1	0	0	0	1	0	copy fasta	BPNT2	chr8	56952931	56998867
BPTF_chr17_67820503_67989378	1/1	c0001	8763	116	26	28	41	4	15	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0002	8772	82	6	14	52	1	9	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0003	8763	13	12	1	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0004	8763	12	9	3	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0005	8763	8	8	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0006	8772	7	6	1	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0007	8772	6	2	0	4	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0008	8772	4	3	1	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0009	8763	2	2	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0010	8772	2	2	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0011	8772	1	0	1	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0012	8772	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0013	8763	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0014	8772	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0015	8763	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0016	8763	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0017	8763	1	0	0	0	0	1	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0018	8781	1	0	0	0	1	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0019	8763	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0020	8763	1	0	1	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0021	8763	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0022	8772	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0023	8763	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0024	8763	1	0	0	0	0	1	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0025	8763	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0026	8772	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0027	8772	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0028	8763	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0029	8763	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0030	8763	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0031	8763	1	0	0	1	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	c0032	8763	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPY2B_chrY_24613004_24644207	0/0	c0001	321	2	0	0	2	0	0	copy fasta	BPY2B	chrY	24613004	24644207
BPY2C_chrY_25025901_25057104	0/0	c0001	321	1	0	0	1	0	0	copy fasta	BPY2C	chrY	25025901	25057104
BPY2_chrY_22979263_23010465	0/0	c0001	321	49	2	14	18	4	11	copy fasta	BPY2	chrY	22979263	23010465