JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
XAF1_chr17_6751046_6780647	0/0	c0006	906	2	0	0	2	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0007	906	2	2	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0008	906	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0009	906	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0010	906	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0011	906	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0012	906	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0013	906	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	c0014	906	1	0	1	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAGE1A_chrX_52490808_52505812	0/0	c0001	246	238	67	53	88	10	20	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	c0002	245	1	0	0	1	0	0	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	c0003	246	1	0	0	0	0	1	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	c0004	246	1	0	0	0	0	1	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1B_chrX_52507077_52522063	0/0	c0001	246	241	63	46	95	11	26	copy fasta	XAGE1B	chrX	52507077	52522063
XAGE2_chrX_52364021_52380680	1/1	c0001	336	247	72	46	94	7	26	copy fasta	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	c0002	336	4	4	0	0	0	0	copy fasta	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	c0003	335	1	0	0	1	0	0	copy fasta	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	c0004	334	1	0	0	1	0	0	copy fasta	XAGE2	chrX	52364021	52380680
XAGE3_chrX_52857528_52873083	1/1	c0001	336	322	77	50	150	11	32	copy fasta	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	c0002	336	1	0	0	1	0	0	copy fasta	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	c0003	336	1	1	0	0	0	0	copy fasta	XAGE3	chrX	52857528	52873083
XAGE5_chrX_52806287_52823301	1/1	c0001	327	262	66	48	113	11	22	copy fasta	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	c0002	327	2	0	0	0	0	2	copy fasta	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	c0003	327	1	0	0	1	0	0	copy fasta	XAGE5	chrX	52806287	52823301
XBP1_chr22_28789560_28805569	1/0	c0001	1131	303	85	47	140	8	22	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/1	c0002	1131	63	0	4	42	5	11	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	c0003	1131	40	0	3	24	3	10	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	c0004	1131	1	1	0	0	0	0	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	c0005	1131	1	0	0	0	0	1	copy fasta	XBP1	chr22	28789560	28805569
XCL1_chr1_168571605_168587069	1/1	c0001	345	415	73	74	209	10	47	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	c0002	345	14	14	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	c0003	345	8	0	1	3	2	2	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	c0004	345	8	5	2	0	0	1	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	c0005	345	4	1	0	3	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	c0006	345	3	0	0	3	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	c0007	345	2	2	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	c0008	345	2	1	1	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL2_chr1_168535768_168548997	1/1	c0001	345	244	71	48	81	9	33	copy fasta	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	c0002	345	158	5	24	113	3	13	copy fasta	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	c0003	345	37	20	1	16	0	0	copy fasta	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	c0004	345	3	0	3	0	0	0	copy fasta	XCL2	chr1	168535768	168548997
XCR1_chr3_46012007_46032483	1/1	c0001	1002	319	52	53	170	14	28	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	c0002	1002	77	42	9	11	2	13	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	c0003	1002	1	0	0	1	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	c0004	1002	1	1	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	c0005	1002	1	1	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	c0006	1002	1	0	0	0	0	1	copy fasta	XCR1	chr3	46012007	46032483
XDH_chr2_31329321_31419742	0/0	c0001	4002	131	31	16	71	6	7	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	c0002	4002	68	3	20	31	4	10	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	1/0	c0003	4002	50	10	14	16	1	8	copy fasta	XDH	chr2	31329321	31419742