JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CEP68_chr2_65051416_65092004	0/0	c0027	2274	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0028	2274	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0029	2271	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0030	2274	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0031	2274	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0032	2274	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0033	2274	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	c0034	2274	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP70_chr3_138489344_138599260	0/0	c0001	1794	111	9	23	59	5	15	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/1	c0002	1794	104	34	6	53	0	10	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	c0003	1794	81	25	19	13	8	16	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	c0004	1794	6	6	0	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	c0005	1794	6	6	0	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	c0006	1794	3	2	1	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	1/0	c0007	1794	2	0	0	0	1	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	c0008	1794	1	0	0	0	0	1	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	c0009	1794	1	1	0	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	c0010	1794	1	0	1	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	c0011	1794	1	1	0	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	c0012	1794	1	0	0	1	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP72_chr5_607340_658553	1/0	c0001	1944	62	5	17	22	5	12	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	c0002	1944	18	0	6	2	1	9	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	c0003	1944	4	1	2	1	0	0	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	c0004	1944	2	0	0	2	0	0	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	c0005	1944	2	2	0	0	0	0	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	c0006	1944	2	0	1	1	0	0	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	c0007	1944	1	0	0	0	0	1	copy fasta	CEP72	chr5	607340	658553
CEP76_chr18_12667625_12707723	1/1	c0001	1980	365	88	67	154	12	42	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	c0002	1980	11	0	3	8	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	c0003	1980	1	0	0	1	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	c0004	1980	1	1	0	0	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	c0005	1980	1	0	0	1	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	c0006	1980	1	1	0	0	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP78_chr9_78231075_78284690	1/0	c0001	2118	205	43	45	82	11	23	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/1	c0002	2118	85	14	21	38	2	9	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0003	2118	25	9	5	6	1	4	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0004	2118	11	10	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0005	2118	6	6	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0006	2118	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0007	2118	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0008	2118	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0009	2118	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0010	2118	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0011	2118	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0012	2118	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	c0013	2118	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP83_chr12_94302698_94464867	0/0	c0001	2106	230	70	35	105	3	17	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	c0002	2106	57	0	7	44	0	6	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/1	c0003	2106	32	4	4	18	2	3	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	1/0	c0004	2106	26	1	16	1	3	4	copy fasta	CEP83	chr12	94302698	94464867