JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VCX3B_chrX_8459830_8471510	0/0	g0048	1	0	0	1	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0049	1	0	0	1	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0050	1	1	0	0	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0051	1	1	0	0	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0052	1	0	0	1	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0053	1	1	0	0	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0054	1	1	0	0	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0055	1	0	0	1	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0056	1	0	0	1	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0057	1	0	0	1	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0058	1	0	0	0	0	1	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0059	1	0	0	1	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0060	1	0	1	0	0	0	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	g0061	1	1	0	0	0	0	VCX3B	chrX	8459830	8471510
VCX_chrX_7838171_7849143	0/0	g0001	213	39	33	109	9	23	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	1/0	g0002	64	21	6	29	2	5	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0003	22	2	15	4	1	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0004	14	8	0	5	1	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0005	5	5	0	0	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0006	4	0	4	0	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0007	4	2	1	0	0	1	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0008	3	0	2	0	0	1	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0009	1	0	0	1	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0010	1	0	0	1	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0011	1	0	0	1	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0012	1	0	0	1	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0013	1	0	0	1	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0014	1	0	0	1	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0015	1	0	0	1	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0016	1	0	0	1	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0017	1	0	0	0	0	1	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0018	1	0	0	0	0	1	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0019	1	0	0	1	0	0	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	g0020	1	1	0	0	0	0	VCX	chrX	7838171	7849143
VCY1B_chrY_14051227_14061958	0/0	g0001	124	16	20	67	5	16	VCY1B	chrY	14051227	14061958
VCY1B_chrY_14051227_14061958	0/0	g0002	2	2	0	0	0	0	VCY1B	chrY	14051227	14061958
VCY1B_chrY_14051227_14061958	0/0	g0003	1	0	0	1	0	0	VCY1B	chrY	14051227	14061958
VCY1B_chrY_14051227_14061958	0/0	g0004	1	0	0	1	0	0	VCY1B	chrY	14051227	14061958
VCY1B_chrY_14051227_14061958	0/0	g0005	1	0	0	1	0	0	VCY1B	chrY	14051227	14061958
VCY_chrY_13980772_13991473	0/0	g0001	117	14	20	63	5	15	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	g0002	2	2	0	0	0	0	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	g0003	1	1	0	0	0	0	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	g0004	1	1	0	0	0	0	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	g0005	1	0	0	1	0	0	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	g0006	1	0	0	1	0	0	VCY	chrY	13980772	13991473
VDAC1_chr5_133966871_134009975	0/0	g0001	15	0	1	12	1	1	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/1	g0002	9	1	5	1	0	1	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	g0003	8	0	0	8	0	0	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	g0004	7	0	0	7	0	0	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	g0005	6	5	1	0	0	0	VDAC1	chr5	133966871	134009975