JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BPTF_chr17_67820503_67989378	0/0	g0242	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0243	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0244	1	0	0	0	0	1	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0245	1	0	1	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0246	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0247	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0248	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0249	1	0	0	0	0	1	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0250	1	0	0	0	0	1	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0251	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0252	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0253	1	0	1	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0254	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0255	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0256	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0257	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0258	1	0	1	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0259	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0260	1	0	0	0	0	1	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0261	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0262	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0263	1	1	0	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0264	1	1	0	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0265	1	1	0	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0266	1	1	0	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0267	1	1	0	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0268	1	1	0	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0269	1	1	0	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0270	1	1	0	0	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0271	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0272	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0273	1	0	0	1	0	0	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	g0274	1	1	0	0	0	0	BPTF	chr17	67820503	67989378
BPY2B_chrY_24613004_24644207	0/0	g0001	1	0	0	1	0	0	BPY2B	chrY	24613004	24644207
BPY2B_chrY_24613004_24644207	0/0	g0002	1	0	0	1	0	0	BPY2B	chrY	24613004	24644207
BPY2C_chrY_25025901_25057104	0/0	g0001	1	0	0	1	0	0	BPY2C	chrY	25025901	25057104
BPY2_chrY_22979263_23010465	0/0	g0001	9	0	0	1	0	8	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0002	7	0	6	0	1	0	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0003	6	1	2	2	0	1	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0004	2	0	0	2	0	0	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0005	2	0	0	2	0	0	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0006	1	0	0	0	1	0	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0007	1	0	0	1	0	0	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0008	1	0	0	1	0	0	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0009	1	0	0	0	0	1	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0010	1	0	0	0	0	1	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0011	1	0	1	0	0	0	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0012	1	0	0	1	0	0	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0013	1	0	0	1	0	0	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	g0014	1	0	0	1	0	0	BPY2	chrY	22979263	23010465