JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP68_chr2_65051416_65092004	0/0	t0034	3532	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0035	3533	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0036	3533	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0037	3533	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0038	3533	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0039	3533	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0040	3533	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0041	3533	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0042	3533	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0043	3533	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0044	3533	1	0	0	0	0	1	copy fasta	CEP68	chr2	65051416	65092004
CEP70_chr3_138489344_138599260	0/0	t0001	843	145	31	31	59	7	17	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/1	t0002	843	82	14	3	54	0	10	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	t0003	838	79	30	14	13	7	15	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	1/0	t0004	843	7	5	1	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	t0005	843	3	2	1	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	t0006	843	2	2	0	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP72_chr5_607340_658553	1/0	t0001	423	83	5	24	25	6	22	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	t0002	425	6	3	2	1	0	0	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	t0003	423	2	0	0	2	0	0	copy fasta	CEP72	chr5	607340	658553
CEP76_chr18_12667625_12707723	1/0	t0001	916	189	42	31	77	8	30	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	t0002	916	97	23	22	45	1	6	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	t0003	916	59	3	10	42	1	3	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/1	t0004	916	19	12	3	0	1	2	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	t0005	916	6	3	2	0	1	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	t0006	916	6	6	0	0	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	t0007	916	1	0	1	0	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	t0008	916	1	1	0	0	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	t0009	916	1	0	1	0	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	t0010	916	1	0	0	0	0	1	copy fasta	CEP76	chr18	12667625	12707723
CEP78_chr9_78231075_78284690	1/0	t0001	9116	88	7	19	38	7	16	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/1	t0002	9117	56	1	14	33	0	7	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0003	9121	18	4	2	8	2	2	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0004	9121	12	0	3	6	0	3	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0005	9118	7	6	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0006	9116	7	0	0	7	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0007	9116	6	5	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0008	9117	6	0	1	5	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0009	9122	5	4	1	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0010	9117	5	0	0	3	0	2	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0011	9112	5	5	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0012	9122	5	0	5	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0013	9121	4	1	3	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0014	9126	4	4	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0015	9122	4	1	1	1	1	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0016	9121	4	0	2	2	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0017	9116	3	3	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0018	9117	3	1	0	2	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0019	9117	3	1	1	0	1	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	t0020	9108	3	1	2	0	0	0	copy fasta	CEP78	chr9	78231075	78284690