JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENOX2_chrX_130617325_130908209	0/0	t0008	3381	1	0	0	1	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0009	3381	1	1	0	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0010	3381	1	1	0	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0011	3381	1	0	1	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0012	3381	1	1	0	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0013	3381	1	0	1	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0014	3381	1	0	0	1	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENPEP_chr4_110471155_110570285	0/0	t0001	3988	131	26	26	59	8	12	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0002	3988	67	10	8	35	0	14	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	1/1	t0003	3988	28	6	2	11	1	6	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0004	3988	17	6	5	3	0	3	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0005	3988	17	17	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0006	3988	10	0	0	9	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0007	3988	8	7	1	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0008	3988	3	0	2	0	1	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0009	3988	3	1	1	0	1	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0010	3988	2	0	2	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0011	3988	2	1	1	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0012	3988	2	0	0	0	1	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0013	3988	2	2	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0014	3988	2	2	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0015	3988	2	0	0	2	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0016	3988	2	0	0	2	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0017	3988	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0018	3861	1	0	0	0	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0019	3988	1	0	0	1	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0020	3988	1	0	0	1	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0021	3988	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0022	3988	1	0	0	0	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0023	3988	1	0	0	1	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0024	3988	1	0	0	0	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0025	3988	1	0	1	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0026	3988	1	0	0	1	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0027	3988	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0028	3988	1	0	0	1	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0029	3988	1	1	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	t0030	3988	1	0	1	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPP1_chr6_131803020_131900155	0/0	t0001	4660	49	6	13	26	2	2	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0002	4658	29	4	4	21	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0003	4661	29	1	13	11	0	4	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0004	4662	20	0	3	13	2	2	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	1/1	t0005	4661	11	2	5	1	0	1	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0006	4660	10	7	0	2	1	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0007	4659	8	3	2	3	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0008	4660	7	0	1	4	0	2	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0009	4657	6	6	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0010	4657	5	3	2	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0011	4657	4	4	0	0	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0012	4660	4	0	0	4	0	0	copy fasta	ENPP1	chr6	131803020	131900155
ENPP1_chr6_131803020_131900155	0/0	t0013	4661	4	0	2	2	0	0	copy fasta	ENPP1	chr6	131803020	131900155