JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAGE12J_chrX_49317037_49334384	0/0	t0006	209	1	0	0	1	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE13_chrX_49326582_49343949	1/0	t0001	208	31	13	4	7	0	6	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	t0002	208	29	5	9	9	1	5	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	t0003	208	18	0	1	9	1	7	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	t0004	208	10	0	4	3	0	3	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	t0005	208	3	1	0	2	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	t0006	209	1	0	0	1	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE13_chrX_49326582_49343949	0/0	t0007	207	1	0	0	1	0	0	copy fasta	GAGE13	chrX	49326582	49343949
GAGE1_chrX_49594020_49613538	1/0	t0001	2640	174	54	30	74	5	10	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0002	2640	49	3	6	30	2	8	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/1	t0003	2640	47	1	17	18	4	6	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0004	2640	12	10	2	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0005	2640	3	0	0	3	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0006	2640	3	0	0	0	0	3	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0007	2640	3	3	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0008	2640	2	2	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0009	2640	1	0	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0010	2642	1	0	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0011	2640	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0012	2638	1	0	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0013	2640	1	0	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0014	2640	1	0	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0015	2640	1	0	0	0	0	1	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0016	2640	1	0	0	0	0	1	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0017	2640	1	0	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0018	2640	1	0	0	1	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0019	2640	1	0	0	0	0	1	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0020	2640	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0021	2640	1	0	1	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0022	2640	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0023	2640	1	0	0	0	0	1	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0024	2640	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0025	2638	1	0	0	0	0	1	copy fasta	GAGE1	chrX	49594020	49613538
GAGE1_chrX_49594020_49613538	0/0	t0026	2640	1	1	0	0	0	0	copy fasta	GAGE1	chrX	49594020	49613538
GAGE2A_chrX_49584496_49601824	1/0	t0001	208	93	24	22	31	4	11	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	t0002	208	16	0	3	10	1	2	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	t0003	208	11	5	1	5	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	t0004	206	4	4	0	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	t0005	209	2	0	1	1	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	t0006	208	2	0	0	0	0	2	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	t0007	208	1	1	0	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAGE2A_chrX_49584496_49601824	0/0	t0008	209	1	1	0	0	0	0	copy fasta	GAGE2A	chrX	49584496	49601824
GAK_chr4_844277_937316	1/1	t0001	526	293	70	51	132	10	28	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	t0002	526	87	17	25	29	4	12	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	t0003	526	2	2	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	t0004	526	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	t0005	526	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	t0006	526	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	t0007	526	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	t0008	526	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316