JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSF2_chr6_122394652_122438119	0/0	t0004	986	5	5	0	0	0	0	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	0/0	t0005	986	3	3	0	0	0	0	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	0/0	t0006	986	1	0	1	0	0	0	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	0/0	t0007	986	1	0	0	0	1	0	copy fasta	HSF2	chr6	122394652	122438119
HSF2_chr6_122394652_122438119	0/0	t0008	986	1	0	0	1	0	0	copy fasta	HSF2	chr6	122394652	122438119
HSF4_chr16_67159745_67174941	1/1	t0001	224	251	87	51	65	9	37	copy fasta	HSF4	chr16	67159745	67174941
HSF4_chr16_67159745_67174941	0/0	t0002	225	14	5	3	3	0	3	copy fasta	HSF4	chr16	67159745	67174941
HSF4_chr16_67159745_67174941	0/0	t0003	224	1	0	0	0	1	0	copy fasta	HSF4	chr16	67159745	67174941
HSF5_chr17_58415167_58493408	1/1	t0001	2328	317	73	69	129	11	33	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	t0002	2328	4	0	0	4	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	t0003	2328	2	0	1	0	1	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	t0004	2328	2	0	0	0	0	2	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	t0005	2328	2	2	0	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	t0006	2328	1	1	0	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	t0007	2328	1	0	0	1	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	t0008	2328	1	1	0	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	t0009	2328	1	0	0	0	0	1	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	t0010	2328	1	1	0	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSFX1_chrX_149769068_149781867	0/0	t0001	692	246	54	47	102	10	33	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	t0002	692	4	1	0	3	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	t0003	692	2	0	1	0	1	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	t0004	692	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX2_chrX_149587512_149600314	0/0	t0001	695	253	63	50	105	9	26	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	t0002	695	20	7	0	12	0	1	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	t0003	694	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	t0004	695	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	t0005	695	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	t0006	696	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	t0007	696	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	t0008	696	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX3_chrX_149543210_149554924	1/1	t0001	255	299	69	56	126	13	33	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	t0002	255	28	6	1	20	0	1	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	t0003	255	4	2	1	1	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	t0004	251	1	1	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX4_chrX_149924573_149936287	1/1	t0001	255	295	74	55	124	10	30	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	t0002	251	3	0	2	0	1	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	t0003	255	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	t0004	255	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	t0005	255	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFY1_chrY_18541720_18553592	0/0	t0001	190	50	8	8	22	2	10	copy fasta	HSFY1	chrY	18541720	18553592
HSFY2_chrY_18766814_18778735	0/0	t0001	239	67	10	5	41	2	9	copy fasta	HSFY2	chrY	18766814	18778735
HSH2D_chr19_16138685_16163575	0/0	t0001	899	255	19	47	154	8	27	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	1/1	t0002	899	101	58	12	17	1	11	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	t0003	899	25	13	6	1	3	2	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	t0004	899	3	0	3	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	t0005	899	3	0	2	1	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	t0006	899	2	2	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	t0007	899	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	t0008	899	1	0	0	1	0	0	copy fasta	HSH2D	chr19	16138685	16163575
HSH2D_chr19_16138685_16163575	0/0	t0009	899	1	1	0	0	0	0	copy fasta	HSH2D	chr19	16138685	16163575