JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCAT_chr16_67934750_67949120	1/1	t0001	174	303	94	60	103	6	38	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	t0002	174	1	0	0	1	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCE1A_chr1_152822473_152833097	1/1	t0001	293	406	85	76	188	11	44	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	t0002	293	3	3	0	0	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	t0003	293	1	0	0	0	1	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	t0004	293	1	0	0	1	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	t0005	293	1	1	0	0	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	t0006	293	1	0	0	1	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/0	t0007	293	1	1	0	0	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1B_chr1_152806971_152818108	1/1	t0001	782	428	90	76	204	12	44	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	t0002	782	8	0	0	8	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	t0003	782	1	0	0	1	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	t0004	782	1	0	0	1	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	t0005	782	1	0	0	1	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1B_chr1_152806971_152818108	0/0	t0006	782	1	0	0	1	0	0	copy fasta	LCE1B	chr1	152806971	152818108
LCE1C_chr1_152799832_152811651	1/1	t0001	362	255	54	32	135	7	25	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	t0002	362	105	16	19	55	1	14	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	t0003	362	47	9	19	10	6	3	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	t0004	362	9	9	0	0	0	0	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	t0005	362	4	4	0	0	0	0	copy fasta	LCE1C	chr1	152799832	152811651
LCE1C_chr1_152799832_152811651	0/0	t0006	362	2	2	0	0	0	0	copy fasta	LCE1C	chr1	152799832	152811651
LCE1D_chr1_152791721_152803181	1/1	t0001	116	379	83	68	180	10	36	copy fasta	LCE1D	chr1	152791721	152803181
LCE1D_chr1_152791721_152803181	0/0	t0002	116	1	1	0	0	0	0	copy fasta	LCE1D	chr1	152791721	152803181
LCE1E_chr1_152781257_152793426	1/0	t0001	844	194	21	34	107	6	25	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/1	t0002	845	132	28	19	71	1	12	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	t0003	287	56	24	16	6	5	5	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	t0004	845	15	13	0	2	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	t0005	845	4	4	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	t0006	845	4	4	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	t0007	845	4	3	1	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1E_chr1_152781257_152793426	0/0	t0008	845	1	1	0	0	0	0	copy fasta	LCE1E	chr1	152781257	152793426
LCE1F_chr1_152770140_152782024	1/1	t0001	370	303	64	62	134	14	27	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	t0002	370	114	17	20	64	1	12	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	t0003	370	11	11	0	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	t0004	370	4	4	0	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	t0005	370	2	2	0	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	t0006	370	2	2	0	0	0	0	copy fasta	LCE1F	chr1	152770140	152782024
LCE1F_chr1_152770140_152782024	0/0	t0007	370	2	0	0	0	1	1	copy fasta	LCE1F	chr1	152770140	152782024
LCE2A_chr1_152693345_152704442	1/1	t0001	291	284	45	71	126	14	26	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	t0002	291	100	29	8	55	0	8	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	t0003	291	20	20	0	0	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	t0004	291	1	0	1	0	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2A_chr1_152693345_152704442	0/0	t0005	291	1	0	0	1	0	0	copy fasta	LCE2A	chr1	152693345	152704442
LCE2B_chr1_152681123_152692397	1/1	t0001	276	395	70	73	196	11	43	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	t0002	276	34	8	11	9	5	1	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	t0003	276	6	6	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	t0004	276	4	4	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	t0005	276	3	3	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	t0006	276	2	2	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2B_chr1_152681123_152692397	0/0	t0007	276	1	0	0	1	0	0	copy fasta	LCE2B	chr1	152681123	152692397