JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCE2B_chr1_152681123_152692397	0/0	t0008	276	1	1	0	0	0	0	copy fasta	LCE2B	chr1	152681123	152692397
LCE2C_chr1_152670279_152681569	1/1	t0001	293	403	71	82	188	18	42	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	t0002	293	18	18	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	t0003	293	3	3	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2C_chr1_152670279_152681569	0/0	t0004	293	2	2	0	0	0	0	copy fasta	LCE2C	chr1	152670279	152681569
LCE2D_chr1_152658380_152669659	1/1	t0001	293	349	73	70	148	17	39	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	t0002	296	20	20	0	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	t0003	293	2	2	0	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	t0004	293	1	0	0	0	1	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	t0005	293	1	1	0	0	0	0	copy fasta	LCE2D	chr1	152658380	152669659
LCE2D_chr1_152658380_152669659	0/0	t0006	293	1	0	0	0	0	1	copy fasta	LCE2D	chr1	152658380	152669659
LCE3C_chr1_152595234_152606086	1/1	t0001	147	58	28	4	20	2	2	copy fasta	LCE3C	chr1	152595234	152606086
LCE3D_chr1_152574381_152585516	1/1	t0001	347	340	89	60	137	10	42	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	t0002	347	1	0	0	1	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3D_chr1_152574381_152585516	0/0	t0003	347	1	1	0	0	0	0	copy fasta	LCE3D	chr1	152574381	152585516
LCE3E_chr1_152560654_152571780	1/1	t0001	341	337	83	47	162	13	30	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	t0002	341	119	10	24	66	3	16	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	t0003	342	4	4	0	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	t0004	341	1	1	0	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE3E_chr1_152560654_152571780	0/0	t0005	341	1	0	1	0	0	0	copy fasta	LCE3E	chr1	152560654	152571780
LCE4A_chr1_152703160_152714434	1/1	t0001	316	354	71	64	169	16	32	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	t0002	316	44	15	2	23	0	4	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	t0003	316	6	0	3	3	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	t0004	316	6	6	0	0	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	t0005	316	2	0	0	2	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	t0006	316	2	2	0	0	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	t0007	316	1	0	1	0	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE4A_chr1_152703160_152714434	0/0	t0008	316	1	0	0	1	0	0	copy fasta	LCE4A	chr1	152703160	152714434
LCE5A_chr1_152505803_152517177	1/1	t0001	504	407	83	72	192	16	42	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	t0002	504	6	5	1	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	t0003	504	6	0	0	6	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	t0004	504	5	5	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	t0005	504	4	4	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	t0006	504	2	0	0	0	2	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	t0007	504	1	0	1	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	t0008	504	1	1	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	t0009	504	1	1	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE5A_chr1_152505803_152517177	0/0	t0010	504	1	1	0	0	0	0	copy fasta	LCE5A	chr1	152505803	152517177
LCE6A_chr1_152837856_152848983	1/1	t0001	398	236	42	57	95	16	24	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	t0002	398	116	6	12	89	0	9	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	t0003	398	27	26	1	0	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	t0004	398	11	11	0	0	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	t0005	398	6	6	0	0	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	t0006	398	2	0	0	0	0	2	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	t0007	398	1	1	0	0	0	0	copy fasta	LCE6A	chr1	152837856	152848983
LCE6A_chr1_152837856_152848983	0/0	t0008	398	1	0	0	0	0	1	copy fasta	LCE6A	chr1	152837856	152848983
LCE7A_chr1_152854996_152866252	1/1	t0001	325	363	66	65	181	8	41	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	t0002	325	29	28	1	0	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	t0003	325	4	4	0	0	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	t0004	325	1	0	0	0	0	1	copy fasta	LCE7A	chr1	152854996	152866252