JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAGEB5_chrX_26211169_26223270	0/0	t0002	390	1	0	0	1	0	0	copy fasta	MAGEB5	chrX	26211169	26223270
MAGEB5_chrX_26211169_26223270	0/0	t0003	389	1	0	1	0	0	0	copy fasta	MAGEB5	chrX	26211169	26223270
MAGEB6B_chrX_26155601_26167410	1/1	t0001	587	295	47	52	149	13	32	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	t0002	587	26	22	4	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	t0003	587	7	6	1	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	t0004	587	4	4	0	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	t0005	587	3	0	0	3	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	t0006	587	3	0	0	3	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	t0007	587	1	0	1	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	t0008	587	1	1	0	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6_chrX_26187440_26200646	0/1	t0001	731	132	25	21	64	4	17	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	t0002	731	106	26	17	54	1	8	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	1/0	t0003	726	57	9	16	18	6	7	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	t0004	731	8	0	2	6	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	t0005	726	7	7	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	t0006	727	4	4	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	t0007	731	3	3	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	t0008	731	1	1	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	t0009	731	1	1	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	t0010	731	1	0	0	1	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEC1_chrX_141898894_141914374	1/1	t0001	828	303	58	55	153	11	24	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0002	828	25	3	7	7	1	7	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0003	826	21	15	3	0	1	2	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0004	826	2	1	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0005	828	2	2	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0006	828	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0007	828	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0008	829	1	0	0	0	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0009	826	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0010	828	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	t0011	828	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC2_chrX_142197342_142210290	0/0	t0001	873	199	19	43	111	9	17	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	1/0	t0002	873	83	39	11	18	3	11	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/1	t0003	873	8	2	1	0	1	3	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0004	872	8	6	1	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0005	873	7	5	2	0	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0006	874	6	1	3	1	0	1	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0007	872	5	3	1	0	0	1	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0008	874	4	3	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0009	873	4	3	1	0	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0010	873	1	1	0	0	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0011	874	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0012	870	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0013	873	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0014	873	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0015	873	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	t0016	873	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGED1_chrX_51888623_51907354	1/1	t0001	387	260	71	47	108	11	21	copy fasta	MAGED1	chrX	51888623	51907354
MAGED1_chrX_51888623_51907354	0/0	t0002	387	5	5	0	0	0	0	copy fasta	MAGED1	chrX	51888623	51907354
MAGED2_chrX_54802745_54821015	1/1	t0001	231	319	78	60	138	11	30	copy fasta	MAGED2	chrX	54802745	54821015