JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
N4BP2L2_chr13_32505292_32543795	0/0	t0034	7688	1	0	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0035	7688	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0036	7687	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0037	7688	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0038	7689	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0039	7689	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0040	7689	1	0	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0041	7689	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0042	7689	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0043	7689	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0044	7689	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0045	7689	1	0	0	0	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0046	7689	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0047	7689	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0048	7687	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0049	7688	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0050	7686	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0051	7687	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0052	7686	1	0	0	0	1	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0053	7687	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0054	7687	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0055	7688	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0056	7686	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0057	7689	1	0	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0058	7689	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0059	7686	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0060	7687	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0061	7686	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0062	7689	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0063	7687	1	0	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0064	7686	1	0	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0065	7687	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0066	7686	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0067	7686	1	0	0	0	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0068	7690	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0069	7688	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2_chr4_40051850_40163252	0/0	t0001	4408	62	0	3	52	1	6	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0002	4397	34	0	4	26	0	4	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	1/0	t0003	4408	28	10	8	6	1	2	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0004	4408	18	0	0	17	1	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0005	4407	15	0	12	0	1	2	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0006	4397	13	6	3	1	0	3	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0007	4408	13	1	1	11	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0008	4397	9	4	3	0	0	2	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0009	4397	7	0	3	2	1	1	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0010	4408	6	3	0	3	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0011	4408	6	6	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0012	4408	6	5	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0013	4397	6	1	0	2	0	3	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0014	4397	6	0	1	5	0	0	copy fasta	N4BP2	chr4	40051850	40163252