JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCOR1_chr14_102587649_102735561	0/0	t0050	4294	1	1	0	0	0	0	copy fasta	RCOR1	chr14	102587649	102735561
RCOR1_chr14_102587649_102735561	0/0	t0051	4294	1	0	0	0	0	1	copy fasta	RCOR1	chr14	102587649	102735561
RCOR2_chr11_63906230_63922164	0/0	t0001	1347	163	22	37	78	6	20	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	1/1	t0002	1344	137	59	26	18	10	22	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	t0003	1344	9	8	1	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	t0004	1347	7	0	0	7	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	t0005	1347	2	0	0	2	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	t0006	1347	1	0	0	1	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	t0007	1347	1	1	0	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	t0008	1347	1	0	0	0	0	1	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	t0009	1344	1	1	0	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	t0010	1344	1	1	0	0	0	0	copy fasta	RCOR2	chr11	63906230	63922164
RCOR2_chr11_63906230_63922164	0/0	t0011	1344	1	0	0	0	0	1	copy fasta	RCOR2	chr11	63906230	63922164
RCOR3_chr1_211254366_211321385	0/1	t0001	2813	148	41	23	68	1	14	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0002	2812	104	11	20	54	5	14	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0003	2814	16	0	3	6	1	6	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0004	2813	13	12	1	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	1/0	t0005	2813	13	7	1	0	2	2	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0006	2816	6	0	4	0	1	1	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0007	2813	5	5	0	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0008	2813	4	4	0	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0009	2815	3	0	0	0	0	3	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0010	2812	2	0	0	2	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0011	2813	2	2	0	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0012	2812	1	0	0	1	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0013	2812	1	0	1	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0014	2812	1	0	1	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0015	2813	1	0	0	1	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0016	2813	1	0	0	1	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0017	2813	1	1	0	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0018	2813	1	1	0	0	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCOR3_chr1_211254366_211321385	0/0	t0019	2813	1	0	0	1	0	0	copy fasta	RCOR3	chr1	211254366	211321385
RCSD1_chr1_167625232_167713696	0/1	t0001	4193	127	24	21	51	6	24	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0002	4193	38	2	11	23	1	1	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0003	4181	36	4	5	20	2	5	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0004	4193	25	0	3	17	2	3	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0005	4193	11	11	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0006	4182	8	4	3	1	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0007	4181	7	1	1	3	1	1	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0008	4197	7	7	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0009	4193	7	7	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0010	4181	7	0	0	5	1	1	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0011	4181	6	1	3	2	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0012	4193	5	0	0	5	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0013	4193	4	0	1	3	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0014	4181	4	0	1	3	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0015	4197	4	4	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0016	4198	3	3	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0017	4198	3	3	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696
RCSD1_chr1_167625232_167713696	0/0	t0018	4197	3	3	0	0	0	0	copy fasta	RCSD1	chr1	167625232	167713696