JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SACS_chr13_23323830_23438702	0/0	t0025	1891	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0026	1896	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0027	1896	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0028	1896	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	t0029	1896	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SAE1_chr19_47125835_47215636	1/1	t0001	1482	361	73	68	162	10	46	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	t0002	1482	7	7	0	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	t0003	1482	4	4	0	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	t0004	1482	2	0	0	2	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	t0005	1482	2	0	0	2	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	t0006	1482	1	1	0	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	t0007	1482	1	0	0	1	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	t0008	1482	1	1	0	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	t0009	1482	1	0	0	1	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAFB2_chr19_5581999_5627776	1/1	t0001	306	293	67	62	112	16	34	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	t0002	307	16	9	2	1	0	4	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	t0003	306	14	0	2	12	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	t0004	305	9	2	3	4	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	t0005	306	8	5	1	0	0	2	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	t0006	306	5	5	0	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	t0007	307	3	0	1	2	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	t0008	306	1	0	0	1	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	t0009	306	1	0	1	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB_chr19_5618083_5673478	1/1	t0001	311	281	75	64	90	10	40	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	t0002	311	1	1	0	0	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAGE1_chrX_135888716_135918062	1/1	t0001	232	248	67	39	112	8	20	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	t0002	232	1	0	0	0	1	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGSIN1_chr7_6324411_6353967	0/0	t0001	2014	108	12	11	73	2	10	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0002	2014	76	29	10	32	0	5	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	1/0	t0003	2014	51	4	17	9	8	12	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0004	2014	30	0	5	20	0	5	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0005	2014	28	5	6	11	3	3	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0006	2014	23	15	0	6	0	2	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/1	t0007	2014	17	2	10	2	1	1	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0008	2014	14	0	0	13	0	1	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0009	2006	11	11	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0010	2014	7	1	3	2	1	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0011	2017	6	1	0	5	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0012	2017	5	2	0	2	0	1	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0013	2014	5	0	0	1	3	1	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0014	2017	4	0	0	3	0	1	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0015	2031	4	1	3	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0016	2014	3	3	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0017	2013	3	0	3	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0018	2014	2	2	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0019	2014	2	1	1	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0020	2014	1	0	0	1	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0021	2007	1	1	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0022	2014	1	1	0	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967
SAGSIN1_chr7_6324411_6353967	0/0	t0023	2014	1	0	1	0	0	0	copy fasta	SAGSIN1	chr7	6324411	6353967