JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLFN12L_chr17_35459254_35542678	0/0	t0138	11344	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0139	11341	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0140	11343	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0141	11344	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0142	11344	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0143	11343	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0144	11346	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0145	11338	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0146	11339	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0147	11341	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0148	11343	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0149	11344	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	t0150	11346	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12_chr17_35405922_35437500	1/1	t0001	770	356	62	60	189	16	27	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	t0002	770	54	26	5	3	0	20	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	t0003	769	5	0	0	5	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	t0004	770	4	0	4	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	t0005	770	3	3	0	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	t0006	770	1	0	1	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	t0007	770	1	0	0	1	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	t0008	770	1	1	0	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	t0009	770	1	0	0	0	0	1	copy fasta	SLFN12	chr17	35405922	35437500
SLFN13_chr17_35430096_35453766	1/1	t0001	5705	88	7	25	34	7	13	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0002	5706	56	12	15	28	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0003	5705	38	6	3	26	2	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0004	5708	20	5	9	1	3	2	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0005	5706	19	0	9	9	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0006	5709	18	2	1	15	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0007	5706	17	1	0	15	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0008	5709	17	0	2	13	0	2	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0009	5709	15	0	1	0	0	14	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0010	5710	15	0	1	14	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0011	5705	14	0	0	14	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0012	5704	7	1	2	3	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0013	5706	6	6	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0014	5707	6	6	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0015	5708	5	5	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0016	5708	5	5	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0017	5708	5	4	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0018	5705	5	0	0	5	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0019	5708	4	0	0	4	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0020	5710	4	0	2	0	0	2	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0021	5704	4	0	0	4	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0022	5710	4	3	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0023	5708	3	3	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0024	5710	3	3	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0025	5707	3	2	0	0	1	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0026	5708	2	0	0	0	0	2	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0027	5710	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	t0028	5709	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766