JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SMCR8_chr17_18310293_18333056	0/0	t0029	5484	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0030	5484	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0031	5484	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0032	5484	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0033	5484	1	0	0	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0034	5484	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0035	5484	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0036	5484	1	0	1	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	t0037	5484	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMDT1_chr22_42074700_42089284	0/1	t0001	1239	367	80	74	162	15	35	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	t0002	1239	11	11	0	0	0	0	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	t0003	1239	5	0	0	0	0	5	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	t0004	1239	3	0	0	0	0	3	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	t0005	1239	2	2	0	0	0	0	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	t0006	1239	1	1	0	0	0	0	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	t0007	1239	1	0	0	0	1	0	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	t0008	1229	1	0	0	1	0	0	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	t0009	1239	1	0	0	0	0	1	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	t0010	1239	1	0	0	1	0	0	copy fasta	SMDT1	chr22	42074700	42089284
SMG1_chr16_18799860_18931408	1/0	t0001	5077	132	27	21	65	5	13	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0002	5074	56	4	17	20	4	11	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0003	5074	39	4	11	19	1	4	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/1	t0004	5081	15	9	3	0	1	1	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0005	5074	8	8	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0006	5077	6	6	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0007	5081	5	5	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0008	5072	5	5	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0009	5074	4	4	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0010	5077	3	3	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0011	5077	3	3	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0012	5083	2	2	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0013	5073	2	2	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0014	5077	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0015	5083	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0016	5081	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0017	5077	1	0	0	0	0	1	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0018	5077	1	0	1	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0019	5077	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0020	5077	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0021	5077	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0022	5077	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0023	5077	1	0	0	0	0	1	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0024	5077	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0025	5077	1	0	0	1	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0026	5074	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0027	5073	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0028	5074	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0029	5072	1	1	0	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0030	5074	1	0	1	0	0	0	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	t0031	5074	1	0	0	0	0	1	copy fasta	SMG1	chr16	18799860	18931408