JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SP1_chr12_53375176_53421446	0/0	t0059	5320	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0060	5323	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0061	5321	1	0	0	0	1	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0062	5322	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0063	5322	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0064	5321	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0065	5322	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0066	5325	1	0	0	0	1	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0067	5327	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0068	5326	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0069	5321	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0070	5320	1	0	0	0	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0071	5317	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0072	5318	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0073	5320	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0074	5312	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0075	5314	1	0	0	0	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0076	5315	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0077	5311	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0078	5318	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0079	5316	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0080	5317	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0081	5316	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0082	5320	1	0	0	0	0	1	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0083	5321	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0084	5323	1	0	1	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0085	5321	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0086	5326	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0087	5322	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0088	5323	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0089	5326	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0090	5328	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0091	5319	1	1	0	0	0	0	copy fasta	SP1	chr12	53375176	53421446
SP1_chr12_53375176_53421446	0/0	t0092	5320	1	0	0	1	0	0	copy fasta	SP1	chr12	53375176	53421446
SP2_chr17_47891236_47933957	0/1	t0001	1187	191	44	24	95	10	17	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	1/0	t0002	1185	155	40	42	41	6	25	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	t0003	1185	6	0	6	0	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	t0004	1186	6	1	4	1	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	t0005	1187	4	3	1	0	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	t0006	1188	3	1	1	1	0	0	copy fasta	SP2	chr17	47891236	47933957
SP2_chr17_47891236_47933957	0/0	t0007	1185	1	1	0	0	0	0	copy fasta	SP2	chr17	47891236	47933957
SP3_chr2_173895775_173970373	0/0	t0001	9364	63	7	6	37	4	9	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0002	9368	39	0	5	32	1	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0003	9368	17	17	0	0	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0004	9365	17	1	0	16	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0005	9362	17	0	4	7	0	6	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0006	9368	15	2	5	6	1	1	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0007	9368	13	10	1	2	0	0	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0008	9364	13	5	3	2	1	2	copy fasta	SP3	chr2	173895775	173970373
SP3_chr2_173895775_173970373	0/0	t0009	9365	9	3	5	0	0	1	copy fasta	SP3	chr2	173895775	173970373