JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPDYE10_chr7_73099008_73160431	0/0	t0023	2276	1	1	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0024	2276	1	1	0	0	0	0	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE10_chr7_73099008_73160431	0/0	t0025	2276	1	0	0	0	0	1	copy fasta	SPDYE10	chr7	73099008	73160431
SPDYE11_chr7_73042862_73062911	0/0	t0001	2103	7	3	2	2	0	0	copy fasta	SPDYE11	chr7	73042862	73062911
SPDYE11_chr7_73042862_73062911	0/0	t0002	2103	1	1	0	0	0	0	copy fasta	SPDYE11	chr7	73042862	73062911
SPDYE12_chr7_74899289_74920078	0/0	t0001	2104	217	26	53	108	4	26	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	1/1	t0002	2104	51	23	10	6	0	10	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0003	2104	29	25	4	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0004	2104	16	0	1	10	0	5	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0005	2100	6	5	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0006	2104	5	5	0	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0007	2104	3	0	0	3	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0008	2104	3	0	0	0	2	1	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0009	2104	3	3	0	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0010	2104	2	0	1	0	1	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0011	2104	2	0	0	1	0	1	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0012	2104	1	1	0	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0013	2104	1	0	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0014	2104	1	0	1	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0015	2104	1	1	0	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0016	2100	1	0	0	0	1	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0017	2104	1	0	1	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0018	2104	1	0	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0019	2100	1	0	1	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0020	2104	1	0	0	1	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0021	2104	1	1	0	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0022	2104	1	0	0	0	0	1	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0023	2100	1	1	0	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE12_chr7_74899289_74920078	0/0	t0024	2104	1	1	0	0	0	0	copy fasta	SPDYE12	chr7	74899289	74920078
SPDYE13_chr7_75275790_75294501	0/0	t0001	1981	15	14	0	0	0	1	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE13_chr7_75275790_75294501	0/0	t0002	1981	1	1	0	0	0	0	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE13_chr7_75275790_75294501	0/0	t0003	1981	1	1	0	0	0	0	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE13_chr7_75275790_75294501	0/0	t0004	1981	1	1	0	0	0	0	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE13_chr7_75275790_75294501	0/0	t0005	1981	1	1	0	0	0	0	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE13_chr7_75275790_75294501	0/0	t0006	1981	1	0	0	0	0	1	copy fasta	SPDYE13	chr7	75275790	75294501
SPDYE14_chr7_75302376_75322429	0/0	t0001	2103	2	2	0	0	0	0	copy fasta	SPDYE14	chr7	75302376	75322429
SPDYE16_chr7_76526313_76548297	0/0	t0001	2071	78	6	10	54	2	6	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0002	2078	47	19	15	5	4	4	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0003	2078	37	3	11	15	2	6	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0004	2071	35	4	14	7	2	8	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0005	2078	12	0	3	9	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	1/0	t0006	2071	11	0	5	0	2	3	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0007	2075	6	5	1	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0008	2071	4	0	0	4	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0009	2078	3	3	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0010	2071	3	3	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0011	2074	2	0	0	2	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0012	2078	2	2	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0013	2078	2	2	0	0	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	t0014	2078	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297