JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRXN1_chr20_641615_658200	0/0	t0021	2115	1	0	0	1	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0022	2115	1	0	0	0	0	1	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0023	2115	1	1	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0024	2115	1	0	0	1	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0025	2115	1	0	0	1	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0026	2115	1	1	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0027	2115	1	1	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0028	2115	1	1	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0029	2114	1	1	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRY_chrY_2781855_2792682	1/1	t0001	214	124	18	19	66	4	15	copy fasta	SRY	chrY	2781855	2792682
SS18L1_chr20_62138769_62187514	1/1	t0001	3359	182	17	50	81	10	22	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0002	3353	40	7	2	21	0	10	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0003	3359	32	27	5	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0004	3353	13	7	3	0	0	3	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0005	3359	9	8	1	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0006	3359	4	3	1	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0007	3359	4	4	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0008	3359	3	3	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0009	3359	3	1	2	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0010	3353	3	3	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0011	3356	3	2	1	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0012	3359	2	2	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0013	3359	2	0	0	1	0	1	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0014	3353	2	2	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0015	3359	1	1	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0016	3359	1	0	0	1	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0017	3359	1	1	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0018	3359	1	0	0	0	0	1	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0019	3353	1	0	0	1	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0020	3359	1	1	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0021	3359	1	0	0	0	0	1	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0022	3359	1	0	1	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0023	3353	1	0	0	0	0	1	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0024	3359	1	1	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0025	3371	1	1	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0026	3353	1	0	0	0	0	1	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0027	3359	1	1	0	0	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L1_chr20_62138769_62187514	0/0	t0028	3359	1	0	0	1	0	0	copy fasta	SS18L1	chr20	62138769	62187514
SS18L2_chr3_42585860_42601934	1/1	t0001	2464	176	16	49	72	10	27	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0002	2464	84	5	14	53	3	9	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0003	2464	47	35	6	2	0	4	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0004	2464	27	5	2	19	0	1	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0005	2464	12	11	1	0	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0006	2464	6	0	1	3	1	1	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0007	2464	6	6	0	0	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0008	2464	5	0	0	5	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0009	2464	5	5	0	0	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0010	2464	3	0	0	3	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0011	2464	3	0	0	3	0	0	copy fasta	SS18L2	chr3	42585860	42601934
SS18L2_chr3_42585860_42601934	0/0	t0012	2464	2	1	1	0	0	0	copy fasta	SS18L2	chr3	42585860	42601934