Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BPNT2_chr8_56952931_56998867	0/0	t0013	6145	3	3	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0014	6141	2	0	2	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0015	6145	2	0	0	2	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0016	6145	2	2	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0017	6145	1	0	0	1	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0018	6145	1	0	1	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0019	6145	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0020	6145	1	0	0	0	1	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0021	6145	1	0	0	0	0	1	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0022	6145	1	0	1	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0023	6145	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0024	6145	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0025	6145	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0026	6145	1	0	0	1	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0027	6144	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0028	6144	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0029	6145	1	0	1	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0030	6145	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0031	6145	1	0	0	0	0	1	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0032	6145	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0033	6144	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0034	6145	1	0	0	1	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0035	6145	1	0	0	0	0	1	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0036	6145	1	0	1	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0037	6145	1	1	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPTF_chr17_67820503_67989378	0/1	t0001	2313	120	25	28	46	3	17	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	t0002	2313	112	24	17	60	3	8	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	1/0	t0003	2313	14	12	1	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	t0004	2310	12	9	3	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	t0005	2313	10	10	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	t0006	2313	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	t0007	2313	1	0	0	0	0	1	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	t0008	2313	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	t0009	2313	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	t0010	2313	1	1	0	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPTF_chr17_67820503_67989378	0/0	t0011	2313	1	0	1	0	0	0	copy fasta	BPTF	chr17	67820503	67989378
BPY2B_chrY_24613004_24644207	0/0	t0001	886	2	0	0	2	0	0	copy fasta	BPY2B	chrY	24613004	24644207
BPY2C_chrY_25025901_25057104	0/0	t0001	886	1	0	0	1	0	0	copy fasta	BPY2C	chrY	25025901	25057104
BPY2_chrY_22979263_23010465	0/0	t0001	886	50	2	14	20	4	10	copy fasta	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	t0002	885	1	0	0	0	0	1	copy fasta	BPY2	chrY	22979263	23010465
BPY2_chrY_22979263_23010465	0/0	t0003	887	1	0	0	1	0	0	copy fasta	BPY2	chrY	22979263	23010465
BRAF_chr7_140714337_140929929	1/0	t0001	7384	78	36	13	19	0	9	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0002	7385	32	9	5	11	0	7	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0003	7384	14	4	3	2	2	3	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0004	7384	13	0	2	7	0	4	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0005	7384	8	7	1	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0006	7383	7	7	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0007	7384	5	5	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0008	7384	4	0	4	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0009	7386	4	4	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929