JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TP53INP1_chr8_94920972_94954378	0/0	t0031	4887	1	0	0	1	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0032	4885	1	0	0	1	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	t0033	4884	1	0	1	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP2_chr20_34699344_34718436	1/1	t0001	3465	336	75	55	151	15	38	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0002	3465	26	0	6	19	0	1	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0003	3463	6	2	4	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0004	3465	5	0	0	5	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0005	3465	4	0	1	0	1	2	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0006	3465	3	0	0	3	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0007	3465	3	0	0	3	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0008	3526	3	0	0	3	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0009	3463	2	2	0	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0010	3465	2	2	0	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0011	3465	1	0	0	1	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0012	3465	1	0	1	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0013	3463	1	1	0	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0014	3463	1	1	0	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0015	3465	1	0	1	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0016	3465	1	0	0	1	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0017	3465	1	1	0	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0018	3465	1	1	0	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0019	3465	1	0	0	0	0	1	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0020	3465	1	1	0	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0021	3465	1	1	0	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0022	3465	1	0	0	1	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0023	3465	1	0	0	1	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	t0024	3465	1	1	0	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53RK_chr20_46679365_46694444	1/1	t0001	2419	195	22	43	92	11	25	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0002	2419	57	5	6	42	0	4	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0003	2419	55	4	8	33	0	10	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0004	2419	49	20	8	16	0	5	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0005	2419	18	15	1	2	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0006	2419	9	8	1	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0007	2419	7	2	2	0	2	1	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0008	2419	3	3	0	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0009	2419	3	0	0	0	3	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0010	2419	2	0	0	2	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0011	2419	1	1	0	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0012	2419	1	0	0	0	0	1	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0013	2419	1	0	0	1	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0014	2419	1	1	0	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0015	2419	1	0	1	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0016	2419	1	0	0	1	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0017	2419	1	0	0	1	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	t0018	2419	1	1	0	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53TG3B_chr16_33355841_33368478	0/0	t0001	1093	45	9	10	16	4	6	copy fasta	TP53TG3B	chr16	33355841	33368478
TP53TG3B_chr16_33355841_33368478	0/0	t0002	1093	1	1	0	0	0	0	copy fasta	TP53TG3B	chr16	33355841	33368478
TP53TG3C_chr16_33189226_33201858	0/0	t0001	1093	10	5	3	0	2	0	copy fasta	TP53TG3C	chr16	33189226	33201858
TP53TG3C_chr16_33189226_33201858	0/0	t0002	1093	1	1	0	0	0	0	copy fasta	TP53TG3C	chr16	33189226	33201858
TP53TG3C_chr16_33189226_33201858	0/0	t0003	1088	1	0	1	0	0	0	copy fasta	TP53TG3C	chr16	33189226	33201858