JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP17L2_chr8_12131435_12143849	0/0	t0011	823	1	0	0	1	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0012	823	1	0	0	1	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0013	823	1	0	0	0	1	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0014	823	1	0	1	0	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0015	823	1	0	0	1	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0016	823	1	0	0	0	0	1	copy fasta	USP17L2	chr8	12131435	12143849
USP17L7_chr8_12127417_12139099	0/0	t0000	0	2	0	0	1	0	1	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	1/1	t0001	91	181	29	32	97	4	17	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	t0002	91	5	2	0	3	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	t0003	91	5	5	0	0	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP17L7_chr8_12127417_12139099	0/0	t0004	91	1	0	0	1	0	0	copy fasta	USP17L7	chr8	12127417	12139099
USP18_chr22_18145170_18182397	1/1	t0001	740	316	56	60	159	6	33	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0002	740	32	29	3	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0003	740	8	1	1	2	0	4	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0004	740	3	3	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0005	740	3	0	0	3	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0006	740	2	2	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0007	740	2	0	2	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0008	740	2	2	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0009	740	2	2	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0010	740	1	0	0	1	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0011	740	1	0	0	0	0	1	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0012	740	1	1	0	0	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0013	740	1	0	0	1	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0014	740	1	0	0	1	0	0	copy fasta	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	t0015	740	1	0	0	1	0	0	copy fasta	USP18	chr22	18145170	18182397
USP19_chr3_49103050_49125823	0/1	t0001	567	220	45	45	83	8	38	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	1/0	t0002	567	86	39	13	19	8	6	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	t0003	567	2	2	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP19_chr3_49103050_49125823	0/0	t0004	567	2	2	0	0	0	0	copy fasta	USP19	chr3	49103050	49125823
USP1_chr1_62432049_62456804	1/0	t0001	1245	147	12	25	95	9	5	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	t0002	1245	137	45	26	43	5	18	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/1	t0003	1245	109	18	23	45	3	19	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	t0004	1245	7	7	0	0	0	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	t0005	1245	6	6	0	0	0	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	t0006	1245	1	0	0	1	0	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	t0007	1245	1	0	0	1	0	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	t0008	1245	1	0	0	1	0	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	t0009	1245	1	1	0	0	0	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	t0010	1245	1	0	0	0	1	0	copy fasta	USP1	chr1	62432049	62456804
USP1_chr1_62432049_62456804	0/0	t0011	1245	1	1	0	0	0	0	copy fasta	USP1	chr1	62432049	62456804
USP20_chr9_129830458_129886828	0/1	t0001	1549	209	47	46	81	8	26	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0002	1549	91	5	19	44	9	14	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	1/0	t0003	1549	15	12	2	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0004	1549	8	8	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0005	1549	5	5	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0006	1548	4	0	0	3	0	1	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0007	1549	4	0	0	4	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0008	1549	3	0	0	0	0	3	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0009	1549	3	2	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828