JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VANGL2_chr1_160395564_160433670	0/0	t0015	3790	3	0	0	0	0	3	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0016	3789	2	0	0	0	2	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0017	3795	2	0	0	0	0	2	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0018	3798	2	0	0	1	0	1	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0019	3795	2	0	0	0	0	2	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0020	3796	2	2	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0021	3789	2	0	0	2	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0022	3790	2	2	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0023	3796	2	2	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0024	3795	1	0	1	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0025	3789	1	0	0	1	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0026	3793	1	0	0	1	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0027	3790	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0028	3789	1	0	0	0	1	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0029	3790	1	0	0	0	0	1	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0030	3789	1	0	0	1	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0031	3788	1	0	0	1	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0032	3789	1	0	0	0	0	1	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0033	3790	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0034	3795	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0035	3790	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0036	3790	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0037	3790	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0038	3789	1	0	1	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0039	3796	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0040	3801	1	0	0	0	1	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0041	3802	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0042	3799	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0043	3797	1	0	0	1	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0044	3793	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0045	3799	1	0	0	0	0	1	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0046	3790	1	0	1	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0047	3789	1	0	0	1	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0048	3790	1	1	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	1/0	t0049	3789	1	0	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VAPA_chr18_9909016_9965021	1/0	t0001	6052	61	7	6	34	3	10	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0002	6054	34	8	7	18	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0003	6044	29	1	1	27	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0004	6051	19	4	10	0	1	4	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0005	6053	19	1	14	2	0	2	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/1	t0006	6052	18	1	2	10	3	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0007	6053	12	0	2	10	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0008	6053	12	1	1	5	4	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0009	6054	8	5	2	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0010	6051	7	1	2	3	1	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0011	6047	7	0	5	2	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0012	6055	6	1	1	4	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0013	6052	6	4	1	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0014	6054	6	0	1	4	1	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0015	6054	5	0	0	5	0	0	copy fasta	VAPA	chr18	9909016	9965021