JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VCX3B_chrX_8459830_8471510	0/0	t0033	436	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0034	435	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0035	435	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0036	435	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0037	435	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0038	437	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0039	435	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0040	435	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX_chrX_7838171_7849143	1/0	t0001	161	153	36	27	62	7	20	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0002	161	103	25	12	56	0	10	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0003	161	23	0	2	18	2	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0004	161	20	5	15	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0005	161	14	0	3	10	1	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0006	161	5	2	0	2	1	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0007	161	4	1	1	2	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0008	161	3	0	0	1	2	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0009	161	2	2	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0010	161	2	2	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0011	161	2	1	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0012	161	2	2	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0013	162	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0014	161	1	0	1	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0015	161	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0016	158	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0017	163	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0018	162	1	0	0	1	0	0	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0019	161	1	0	0	0	0	1	copy fasta	VCX	chrX	7838171	7849143
VCX_chrX_7838171_7849143	0/0	t0020	161	1	1	0	0	0	0	copy fasta	VCX	chrX	7838171	7849143
VCY1B_chrY_14051227_14061958	0/0	t0001	163	127	17	20	69	5	16	copy fasta	VCY1B	chrY	14051227	14061958
VCY1B_chrY_14051227_14061958	0/0	t0002	162	1	0	0	1	0	0	copy fasta	VCY1B	chrY	14051227	14061958
VCY1B_chrY_14051227_14061958	0/0	t0003	163	1	1	0	0	0	0	copy fasta	VCY1B	chrY	14051227	14061958
VCY_chrY_13980772_13991473	0/0	t0001	133	121	16	20	65	5	15	copy fasta	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	t0002	134	1	1	0	0	0	0	copy fasta	VCY	chrY	13980772	13991473
VCY_chrY_13980772_13991473	0/0	t0003	133	1	1	0	0	0	0	copy fasta	VCY	chrY	13980772	13991473
VDAC1_chr5_133966871_134009975	0/1	t0001	988	200	46	21	114	7	11	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	1/0	t0002	988	141	38	20	66	6	10	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	t0003	986	35	3	8	12	3	9	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	t0004	989	4	0	0	2	0	2	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	t0005	988	4	1	3	0	0	0	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	t0006	988	3	3	0	0	0	0	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	t0007	988	2	2	0	0	0	0	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	t0008	986	2	2	0	0	0	0	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	t0009	988	1	0	1	0	0	0	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	t0010	988	1	1	0	0	0	0	copy fasta	VDAC1	chr5	133966871	134009975
VDAC1_chr5_133966871_134009975	0/0	t0011	988	1	0	1	0	0	0	copy fasta	VDAC1	chr5	133966871	134009975
VDAC2_chr10_75205796_75236448	0/1	t0001	628	287	74	43	145	5	19	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0002	628	37	4	5	21	4	3	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	1/0	t0003	628	33	2	11	7	3	9	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0004	628	15	0	0	12	0	3	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0005	628	12	6	1	3	2	0	copy fasta	VDAC2	chr10	75205796	75236448