JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4E1_chr14_21662886_21678818	0/0	a0011	315	1	0	0	0	0	1	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	a0012	209	1	0	0	0	1	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E2_chr14_21648835_21672642	1/0	a0001	313	252	66	50	102	10	23	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/1	a0002	313	155	3	17	111	4	19	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	a0003	313	46	22	15	3	4	2	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	a0004	313	1	0	0	1	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	a0005	313	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	a0006	313	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	a0007	313	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	a0008	313	1	0	0	1	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4F15_chr15_101807202_101825197	1/1	a0001	312	367	80	77	148	15	45	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	a0002	312	14	10	3	0	1	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	a0003	312	4	4	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	a0004	312	2	2	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	a0005	142	1	0	0	0	0	1	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	a0006	312	1	1	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	a0007	312	1	1	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F16_chr1_680716_691654	0/0	a0001	312	163	30	36	73	5	19	copy fasta	OR4F16	chr1	680716	691654
OR4F16_chr1_680716_691654	0/0	a0002	132	10	1	2	3	1	3	copy fasta	OR4F16	chr1	680716	691654
OR4F16_chr1_680716_691654	0/0	a0003	132	1	1	0	0	0	0	copy fasta	OR4F16	chr1	680716	691654
OR4F16_chr1_680716_691654	0/0	a0004	132	1	1	0	0	0	0	copy fasta	OR4F16	chr1	680716	691654
OR4F16_chr1_680716_691654	0/0	a0005	312	1	1	0	0	0	0	copy fasta	OR4F16	chr1	680716	691654
OR4F17_chr19_102104_118156	1/0	a0001	305	198	31	21	127	1	17	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	a0002	305	20	0	6	12	1	1	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	a0003	305	2	0	1	1	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	a0004	252	2	0	0	2	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	a0005	305	2	2	0	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	a0006	305	1	0	1	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	a0007	305	1	1	0	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	a0008	305	1	0	1	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F21_chr8_161086_172024	0/0	a0001	312	116	14	30	53	11	8	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	a0002	312	18	11	0	7	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	a0003	312	18	10	4	0	1	3	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	a0004	312	5	1	0	4	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	a0005	10	4	0	2	1	0	1	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	a0006	312	3	2	1	0	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	a0007	312	3	3	0	0	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	a0010	312	1	0	1	0	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F29_chr1_445740_456678	0/0	a0001	312	5	4	0	0	0	1	copy fasta	OR4F29	chr1	445740	456678
OR4F29_chr1_445740_456678	0/0	a0002	312	1	0	0	0	0	1	copy fasta	OR4F29	chr1	445740	456678
OR4F29_chr1_445740_456678	0/0	a0003	312	1	1	0	0	0	0	copy fasta	OR4F29	chr1	445740	456678
OR4F29_chr1_445740_456678	0/0	a0004	312	1	1	0	0	0	0	copy fasta	OR4F29	chr1	445740	456678
OR4F3_chr5_181362268_181373262	0/1	a0001	312	117	9	29	62	4	12	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	a0002	10	5	2	0	3	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	a0003	312	5	0	0	5	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	a0004	312	1	0	0	1	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	a0005	312	1	0	0	1	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	a0006	312	1	0	1	0	0	0	copy fasta	OR4F3	chr5	181362268	181373262