JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBMXL3_chrX_115184410_115197868	0/0	a0051	1076	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0052	1076	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMX_chrX_136868461_136885725	0/0	a0000	0	1	0	0	0	0	1	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	1/1	a0001	391	300	74	48	133	11	32	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	a0002	391	1	1	0	0	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	a0003	102	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	a0004	148	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	a0005	310	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	a0006	361	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	a0007	392	1	1	0	0	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	a0008	15	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMY1A1_chrY_21529879_21554326	0/0	a0001	496	17	8	3	5	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0002	496	16	0	3	11	1	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0003	496	10	2	1	6	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0004	496	2	1	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0005	40	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0006	55	1	0	1	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0007	67	1	0	0	0	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0008	175	1	0	1	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0009	384	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0010	449	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0011	479	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0012	488	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0013	496	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0014	302	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0015	459	1	1	0	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0016	496	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0017	496	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0018	384	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0019	131	1	0	0	0	1	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0020	108	1	0	0	0	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0021	109	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0022	38	1	0	1	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	a0023	16	1	0	1	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1B_chrY_21506338_21530786	0/0	a0001	496	1	0	0	1	0	0	copy fasta	RBMY1B	chrY	21506338	21530786
RBMY1B_chrY_21506338_21530786	0/0	a0002	496	1	0	0	1	0	0	copy fasta	RBMY1B	chrY	21506338	21530786
RBMY1B_chrY_21506338_21530786	0/0	a0003	496	1	0	0	1	0	0	copy fasta	RBMY1B	chrY	21506338	21530786
RBMY1E_chrY_21898622_21923032	0/0	a0001	496	1	0	0	1	0	0	copy fasta	RBMY1E	chrY	21898622	21923032
RBMY1F_chrY_22163542_22187923	0/0	a0001	496	10	0	6	2	2	0	copy fasta	RBMY1F	chrY	22163542	22187923
RBMY1F_chrY_22163542_22187923	0/0	a0002	496	2	0	2	0	0	0	copy fasta	RBMY1F	chrY	22163542	22187923
RBMY1F_chrY_22163542_22187923	0/0	a0003	264	1	1	0	0	0	0	copy fasta	RBMY1F	chrY	22163542	22187923
RBMY1J_chrY_22398410_22422881	0/0	a0001	496	1	0	0	1	0	0	copy fasta	RBMY1J	chrY	22398410	22422881
RBP1_chr3_139512438_139544742	1/0	a0001	197	277	55	63	111	9	38	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/1	a0002	197	73	27	14	23	2	6	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	a0003	197	2	2	0	0	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	a0004	70	1	0	0	1	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	a0005	197	1	0	0	0	1	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	a0006	197	1	0	1	0	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	a0007	197	1	0	0	1	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP2_chr3_139447884_139481516	1/1	a0001	134	265	74	62	79	12	36	copy fasta	RBP2	chr3	139447884	139481516