JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMCHD1_chr18_2650726_2810017	0/0	a0013	2005	1	1	0	0	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0014	2005	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCHD1_chr18_2650726_2810017	0/0	a0015	2005	1	0	0	1	0	0	copy fasta	SMCHD1	chr18	2650726	2810017
SMCO1_chr3_196501879_196520346	1/1	a0001	214	328	35	71	161	18	41	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	a0002	214	23	23	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	a0003	214	17	15	2	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	a0004	214	12	8	1	3	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	a0005	214	9	0	0	4	0	5	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	a0006	214	5	5	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	a0007	214	2	0	0	0	0	2	copy fasta	SMCO1	chr3	196501879	196520346
SMCO1_chr3_196501879_196520346	0/0	a0008	214	2	2	0	0	0	0	copy fasta	SMCO1	chr3	196501879	196520346
SMCO2_chr12_27441736_27507185	0/0	a0000	0	21	13	2	3	1	2	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	1/1	a0001	343	177	31	40	69	12	23	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	a0002	343	80	35	5	35	1	4	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	a0003	343	72	6	4	49	0	13	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	a0004	343	4	1	1	0	0	2	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	a0005	343	2	2	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	a0006	343	2	2	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	a0007	343	1	1	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	a0008	343	1	1	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO3_chr12_14799650_14819182	1/1	a0001	225	302	48	72	134	14	32	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	a0002	225	64	25	6	21	2	10	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	a0003	225	10	4	0	1	2	3	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	a0004	225	9	9	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	a0005	225	2	0	2	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	a0006	225	1	0	0	0	0	1	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	a0007	225	1	1	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	a0008	225	1	1	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO4_chr11_93473472_93548391	1/1	a0001	59	411	88	68	195	14	44	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	a0002	59	1	0	0	1	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCP_chr1_152873322_152890047	1/1	a0001	116	395	78	69	198	10	38	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	a0002	116	22	21	1	0	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	a0003	116	1	1	0	0	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCR8_chr17_18310293_18333056	1/1	a0001	937	136	5	23	79	8	19	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0002	937	109	44	17	37	2	9	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0003	937	94	18	13	53	2	8	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0004	937	60	17	18	16	4	5	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0005	937	13	12	1	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0006	937	2	2	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0007	937	2	0	0	2	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0008	937	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0009	937	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0010	937	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0011	937	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0012	937	1	0	0	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	a0013	937	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMDT1_chr22_42074700_42089284	0/1	a0001	107	392	94	74	163	16	44	copy fasta	SMDT1	chr22	42074700	42089284
SMDT1_chr22_42074700_42089284	0/0	a0002	107	1	0	0	1	0	0	copy fasta	SMDT1	chr22	42074700	42089284
SMG1_chr16_18799860_18931408	1/1	a0001	3661	259	83	47	88	12	27	copy fasta	SMG1	chr16	18799860	18931408
SMG1_chr16_18799860_18931408	0/0	a0002	3661	14	0	5	6	0	3	copy fasta	SMG1	chr16	18799860	18931408