JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TP53RK_chr20_46679365_46694444	0/0	a0005	253	2	0	0	2	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	a0006	253	1	1	0	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53TG3B_chr16_33355841_33368478	0/0	a0001	124	46	10	10	16	4	6	copy fasta	TP53TG3B	chr16	33355841	33368478
TP53TG3C_chr16_33189226_33201858	0/0	a0001	124	12	6	4	0	2	0	copy fasta	TP53TG3C	chr16	33189226	33201858
TP53TG3D_chr16_32248286_32260928	0/0	a0001	124	187	12	55	96	12	12	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	a0002	124	2	2	0	0	0	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	a0003	124	1	0	1	0	0	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3E_chr16_33299306_33311945	0/0	a0001	124	42	12	14	6	6	4	copy fasta	TP53TG3E	chr16	33299306	33311945
TP53TG3F_chr16_33454612_33467249	0/0	a0001	124	36	10	2	14	0	10	copy fasta	TP53TG3F	chr16	33454612	33467249
TP53TG3_chr16_32668530_32681165	0/0	a0001	124	254	46	38	126	8	36	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	a0002	124	4	0	4	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG5_chr20_45367557_45383325	1/0	a0001	290	157	55	26	63	5	7	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/1	a0002	289	123	19	21	58	5	19	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	a0003	290	90	6	11	56	2	15	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	a0004	290	8	1	7	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	a0005	290	6	5	1	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	a0006	289	4	0	0	4	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	a0007	290	1	0	0	0	0	1	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	a0008	216	1	0	0	1	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	a0009	290	1	1	0	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	a0010	290	1	1	0	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53_chr17_7663421_7692490	1/0	a0001	393	181	57	29	62	7	25	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/1	a0002	393	177	31	47	68	11	19	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	a0003	393	2	0	0	2	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	a0004	393	1	0	0	1	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	a0005	393	1	0	0	1	0	0	copy fasta	TP53	chr17	7663421	7692490
TP63_chr3_189626389_189902276	1/1	a0001	680	312	90	60	114	10	36	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189784659_189902276	1/1	a0001	586	398	98	74	170	12	42	copy fasta	TP63	chr3	189784659	189902276
TP73_chr1_3647516_3741201	0/0	a0000	0	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	1/1	a0001	636	351	89	69	132	18	41	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	a0002	636	3	3	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	a0003	636	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	a0004	636	1	0	0	0	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	a0005	636	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TPBGL_chr11_75235774_75248704	1/1	a0001	382	360	76	63	161	18	40	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	a0002	382	5	0	0	5	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	a0003	382	4	4	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	a0004	382	3	3	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	a0005	382	3	3	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	a0006	382	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	a0007	382	1	0	1	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	a0008	382	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBG_chr6_82358817_82372420	1/1	a0001	420	425	95	68	201	14	45	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	a0002	420	3	0	0	0	0	3	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	a0003	420	2	2	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	a0004	420	1	1	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	a0005	420	1	0	0	1	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPCN1_chr12_113216464_113303585	1/1	a0001	816	249	84	22	112	10	19	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	a0002	816	1	0	0	0	0	1	copy fasta	TPCN1	chr12	113216464	113303585
TPCN2_chr11_69043932_69095597	1/0	a0001	752	119	20	23	74	0	1	copy fasta	TPCN2	chr11	69043932	69095597