JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TSPOAP1_chr17_58296231_58333795	0/0	a0050	1857	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0051	1863	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0052	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0053	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0054	1857	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0055	1857	1	0	0	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	a0056	1857	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPO_chr22_43146559_43168242	0/0	a0001	169	260	68	51	110	9	22	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/1	a0002	169	85	5	13	47	4	15	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	1/0	a0003	169	53	20	10	12	3	7	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/0	a0004	169	1	0	0	1	0	0	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/0	a0005	169	1	1	0	0	0	0	copy fasta	TSPO	chr22	43146559	43168242
TSPY10_chrY_9522880_9535676	0/0	a0001	308	1	0	0	1	0	0	copy fasta	TSPY10	chrY	9522880	9535676
TSPY1_chrY_9461955_9474749	0/0	a0001	308	10	2	1	3	0	4	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	a0002	88	4	0	1	0	2	1	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	a0003	308	4	0	1	1	1	1	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	a0004	290	1	0	0	1	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	a0005	308	1	0	0	1	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	a0006	308	1	1	0	0	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	a0007	171	1	0	0	1	0	0	copy fasta	TSPY1	chrY	9461955	9474749
TSPY1_chrY_9461955_9474749	0/0	a0008	308	1	0	0	0	0	1	copy fasta	TSPY1	chrY	9461955	9474749
TSPY2_chrY_6241223_6254018	0/0	a0001	308	95	11	19	46	4	15	copy fasta	TSPY2	chrY	6241223	6254018
TSPY2_chrY_6241223_6254018	0/0	a0002	308	11	0	0	11	0	0	copy fasta	TSPY2	chrY	6241223	6254018
TSPY2_chrY_6241223_6254018	0/0	a0003	308	1	1	0	0	0	0	copy fasta	TSPY2	chrY	6241223	6254018
TSPY2_chrY_6241223_6254018	0/0	a0004	70	1	0	0	1	0	0	copy fasta	TSPY2	chrY	6241223	6254018
TSPY4_chrY_9332464_9345278	0/0	a0001	54	1	0	0	1	0	0	copy fasta	TSPY4	chrY	9332464	9345278
TSPY4_chrY_9332464_9345278	0/0	a0002	308	1	0	0	1	0	0	copy fasta	TSPY4	chrY	9332464	9345278
TSPY4_chrY_9332464_9345278	0/0	a0003	308	1	0	0	1	0	0	copy fasta	TSPY4	chrY	9332464	9345278
TSPYL1_chr6_116269858_116284930	0/0	a0001	438	186	11	21	121	7	26	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/1	a0002	438	107	31	22	44	4	5	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	a0003	438	44	24	2	9	2	7	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	a0004	438	39	19	4	10	1	5	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	1/0	a0005	437	32	4	21	0	3	3	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	a0006	438	2	0	0	2	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	a0007	22	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	a0008	438	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	a0009	438	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	a0010	438	1	0	0	0	1	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	a0011	438	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	a0012	438	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL2_chrX_53077367_53093540	1/1	a0001	693	228	69	34	93	11	19	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0002	92	4	0	1	1	0	2	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0003	690	4	0	0	4	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0004	92	4	1	2	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0005	694	4	0	0	4	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0006	693	3	3	0	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0007	61	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0008	284	1	1	0	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0009	61	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	a0010	145	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540