JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
WWP1_chr8_86337547_86473503	0/0	a0002	922	1	0	1	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	a0003	922	1	0	0	0	0	1	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	a0004	922	1	0	1	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP2_chr16_69757332_69946739	1/1	a0001	870	299	78	60	109	14	36	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	a0002	870	4	0	0	4	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	a0003	870	3	3	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	a0004	870	2	2	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	a0005	870	2	0	0	2	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	a0006	870	1	1	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	a0007	870	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	a0008	870	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	a0009	870	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWTR1_chr3_149512235_149663025	1/1	a0001	400	303	88	52	126	6	29	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	a0002	400	23	3	2	17	0	1	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	a0003	400	4	0	2	0	0	2	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	a0004	400	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	a0005	400	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	a0006	400	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	a0007	400	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
XAB2_chr19_7614525_7634545	1/1	a0001	855	379	93	74	156	12	42	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	a0002	855	2	0	0	2	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	a0003	855	2	0	0	2	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	a0004	855	2	2	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	a0005	855	1	0	0	1	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	a0006	855	1	1	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	a0007	705	1	0	0	1	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	a0008	855	1	0	0	1	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	a0009	855	1	0	0	1	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAF1_chr17_6751046_6780647	1/1	a0001	301	329	39	64	168	14	42	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	a0002	301	77	26	3	44	2	2	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	a0003	301	29	25	1	3	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	a0004	301	5	4	1	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	a0005	301	2	0	0	2	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	a0006	301	2	2	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	a0007	301	1	0	1	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	a0008	301	1	0	0	1	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	a0009	301	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	a0010	301	1	1	0	0	0	0	copy fasta	XAF1	chr17	6751046	6780647
XAGE1A_chrX_52490808_52505812	0/0	a0001	81	238	67	53	88	10	20	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	a0002	28	1	0	0	1	0	0	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	a0003	81	1	0	0	0	0	1	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1A_chrX_52490808_52505812	0/0	a0004	81	1	0	0	0	0	1	copy fasta	XAGE1A	chrX	52490808	52505812
XAGE1B_chrX_52507077_52522063	0/0	a0001	81	241	63	46	95	11	26	copy fasta	XAGE1B	chrX	52507077	52522063
XAGE2_chrX_52364021_52380680	0/0	a0000	0	1	0	0	1	0	0	copy fasta	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	1/1	a0001	111	247	72	46	94	7	26	copy fasta	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	a0002	111	4	4	0	0	0	0	copy fasta	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	a0003	98	1	0	0	1	0	0	copy fasta	XAGE2	chrX	52364021	52380680
XAGE3_chrX_52857528_52873083	1/1	a0001	111	324	78	50	151	11	32	copy fasta	XAGE3	chrX	52857528	52873083
XAGE5_chrX_52806287_52823301	0/0	a0000	0	1	0	0	1	0	0	copy fasta	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	1/1	a0001	108	264	66	48	113	11	24	copy fasta	XAGE5	chrX	52806287	52823301