Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACSF3_chr16_89088852_89161233	0/0	a0007	229	2	0	0	2	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	a0008	576	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	a0009	576	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	a0010	576	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	a0011	576	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	a0012	576	1	0	0	0	0	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSL1_chr4_184750595_184830968	1/1	a0001	698	390	95	71	166	14	42	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	a0002	698	1	0	1	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	a0003	698	1	1	0	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL3_chr2_222856036_222949639	1/1	a0001	720	249	84	55	70	14	24	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	a0002	720	1	0	1	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	a0003	720	1	1	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	a0004	720	1	1	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL4_chrX_109636335_109738257	1/1	a0001	670	220	58	42	79	11	28	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	a0002	670	1	0	0	1	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	a0003	670	1	0	1	0	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL5_chr10_112369116_112433376	1/1	a0001	683	327	86	57	129	10	43	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	a0002	683	27	1	5	19	2	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	a0003	683	4	4	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	a0004	683	2	1	1	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	a0005	683	1	0	1	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	a0006	683	1	0	0	0	0	1	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	a0007	683	1	1	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	a0008	683	1	1	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL6_chr5_131944973_132016658	1/1	a0001	722	322	81	67	137	12	23	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	a0002	722	1	0	0	0	0	1	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	a0003	147	1	0	0	1	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	a0004	722	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	a0005	722	1	0	1	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSM1_chr16_20618235_20702680	1/1	a0001	577	296	75	44	122	13	40	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	a0002	577	9	9	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	a0003	577	3	0	2	0	1	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	a0004	577	2	2	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	a0005	577	2	1	1	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	a0006	577	2	2	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	a0007	577	1	1	0	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	a0008	577	1	0	1	0	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	a0009	577	1	0	0	1	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM1_chr16_20618235_20702680	0/0	a0010	577	1	0	0	1	0	0	copy fasta	ACSM1	chr16	20618235	20702680
ACSM2A_chr16_20446521_20492669	0/0	a0001	577	110	19	50	20	8	13	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0002	577	90	0	8	68	4	10	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/1	a0003	577	71	44	5	13	1	7	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0004	577	51	8	6	31	1	5	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	1/0	a0005	577	34	1	4	22	2	4	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0006	114	34	0	0	33	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0007	577	12	9	3	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0008	577	8	2	3	3	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0009	577	7	7	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0010	577	4	0	0	0	0	4	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0011	577	4	4	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669