JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CT45A3_chrX_135755044_135773191	0/0	a0004	16	1	0	0	1	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	a0005	174	1	0	1	0	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	a0006	189	1	0	0	1	0	0	copy fasta	CT45A3	chrX	135755044	135773191
CT45A5_chrX_135770852_135790503	0/0	a0000	0	1	0	1	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	a0001	189	148	35	28	60	4	21	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	a0002	189	20	6	3	11	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	a0003	189	5	5	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	a0004	189	2	0	0	0	1	1	copy fasta	CT45A5	chrX	135770852	135790503
CT45A5_chrX_135770852_135790503	0/0	a0005	184	1	1	0	0	0	0	copy fasta	CT45A5	chrX	135770852	135790503
CT45A6_chrX_135789685_135807787	0/0	a0001	189	29	8	5	9	2	5	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	a0002	189	2	1	0	0	0	1	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	a0003	189	2	2	0	0	0	0	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	a0004	73	1	0	0	0	0	1	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	a0005	104	1	0	0	0	1	0	copy fasta	CT45A6	chrX	135789685	135807787
CT45A6_chrX_135789685_135807787	0/0	a0006	184	1	0	1	0	0	0	copy fasta	CT45A6	chrX	135789685	135807787
CT45A7_chrX_135824229_135842280	0/0	a0001	189	12	0	4	7	1	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	a0002	189	3	1	1	1	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	a0003	189	2	0	1	1	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	a0004	58	1	0	0	1	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A7_chrX_135824229_135842280	0/0	a0005	73	1	0	1	0	0	0	copy fasta	CT45A7	chrX	135824229	135842280
CT45A8_chrX_135841497_135859538	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	a0001	189	4	1	0	3	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	a0002	122	1	0	0	0	1	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	a0003	189	1	1	0	0	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A8_chrX_135841497_135859538	0/0	a0004	189	1	0	0	1	0	0	copy fasta	CT45A8	chrX	135841497	135859538
CT45A9_chrX_135858418_135876812	0/0	a0001	189	7	1	3	2	0	1	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	a0002	189	2	2	0	0	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	a0003	189	2	0	1	1	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	a0004	132	1	1	0	0	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT45A9_chrX_135858418_135876812	0/0	a0005	84	1	1	0	0	0	0	copy fasta	CT45A9	chrX	135858418	135876812
CT47A10_chrX_120933701_120947023	0/0	a0001	288	6	0	0	6	0	0	copy fasta	CT47A10	chrX	120933701	120947023
CT47A10_chrX_120933701_120947023	0/0	a0002	31	1	0	0	1	0	0	copy fasta	CT47A10	chrX	120933701	120947023
CT47A1_chrX_120977476_120990760	0/0	a0001	288	294	68	56	130	11	29	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	a0002	288	2	0	0	2	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	a0003	281	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	a0004	288	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	a0005	187	1	0	0	0	0	1	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	a0006	202	1	0	0	1	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	a0007	288	1	1	0	0	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A1_chrX_120977476_120990760	0/0	a0008	288	1	1	0	0	0	0	copy fasta	CT47A1	chrX	120977476	120990760
CT47A2_chrX_120972606_120985928	0/0	a0001	288	244	60	56	95	6	27	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	a0002	288	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	a0003	288	1	1	0	0	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	a0004	202	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	a0005	202	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	a0006	288	1	0	0	0	0	1	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	a0007	288	1	1	0	0	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	a0008	202	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	a0009	202	1	0	0	1	0	0	copy fasta	CT47A2	chrX	120972606	120985928
CT47A2_chrX_120972606_120985928	0/0	a0010	288	1	0	0	0	0	1	copy fasta	CT47A2	chrX	120972606	120985928