JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBMY1B_chrY_21506338_21530786	0/0	c0003	1491	1	0	0	1	0	0	copy fasta	RBMY1B	chrY	21506338	21530786
RBMY1E_chrY_21898622_21923032	0/0	c0001	1491	1	0	0	1	0	0	copy fasta	RBMY1E	chrY	21898622	21923032
RBMY1F_chrY_22163542_22187923	0/0	c0001	1491	8	0	6	0	2	0	copy fasta	RBMY1F	chrY	22163542	22187923
RBMY1F_chrY_22163542_22187923	0/0	c0002	1491	2	0	2	0	0	0	copy fasta	RBMY1F	chrY	22163542	22187923
RBMY1F_chrY_22163542_22187923	0/0	c0003	1491	2	0	0	2	0	0	copy fasta	RBMY1F	chrY	22163542	22187923
RBMY1F_chrY_22163542_22187923	0/0	c0004	1488	1	1	0	0	0	0	copy fasta	RBMY1F	chrY	22163542	22187923
RBMY1J_chrY_22398410_22422881	0/0	c0001	1491	1	0	0	1	0	0	copy fasta	RBMY1J	chrY	22398410	22422881
RBP1_chr3_139512438_139544742	1/0	c0001	594	242	53	49	101	6	32	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/1	c0002	594	73	27	14	23	2	6	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	c0003	594	33	2	14	9	3	5	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	c0004	594	2	2	0	0	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	c0005	572	1	0	0	1	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	c0006	594	1	0	0	0	1	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	c0007	594	1	0	0	1	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	c0008	594	1	0	1	0	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	c0009	594	1	0	0	0	0	1	copy fasta	RBP1	chr3	139512438	139544742
RBP1_chr3_139512438_139544742	0/0	c0010	594	1	0	0	1	0	0	copy fasta	RBP1	chr3	139512438	139544742
RBP2_chr3_139447884_139481516	1/1	c0001	405	265	74	62	79	12	36	copy fasta	RBP2	chr3	139447884	139481516
RBP2_chr3_139447884_139481516	0/0	c0002	405	1	0	0	1	0	0	copy fasta	RBP2	chr3	139447884	139481516
RBP3_chr10_47343363_47362881	1/1	c0001	3744	301	35	60	154	13	37	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0002	3744	27	13	1	11	0	2	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0003	3744	23	21	2	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0004	3744	7	5	2	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0005	3744	7	7	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0006	3744	6	0	0	6	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0007	3744	4	3	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0008	3744	4	0	0	4	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0009	3744	3	0	2	0	1	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0010	3744	2	0	0	2	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0011	3744	2	2	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0012	3744	2	0	0	2	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0013	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0014	3744	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0015	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0016	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0017	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0018	3744	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0019	3744	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0020	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0021	3744	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0022	3744	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0023	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0024	3744	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0025	3744	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0026	3744	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0027	3744	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0028	3744	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0029	3744	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0030	3744	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	c0031	3744	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881