JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSX1_chrX_48250392_48272444	0/0	c0007	540	1	0	0	0	0	1	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	c0008	568	1	0	0	1	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	c0009	567	1	1	0	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX2B_chrX_52746252_52766536	0/0	c0001	567	45	10	18	9	1	7	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	c0002	567	7	3	1	3	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	c0003	564	1	0	0	1	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	c0004	567	1	1	0	0	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2B_chrX_52746252_52766536	0/0	c0005	567	1	0	0	1	0	0	copy fasta	SSX2B	chrX	52746252	52766536
SSX2IP_chr1_84638706_84695461	0/0	c0001	1845	143	26	27	71	4	15	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	1/0	c0002	1845	89	34	10	34	2	8	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/1	c0003	1845	81	27	23	17	4	9	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	c0004	1845	1	0	0	1	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	c0005	1845	1	0	0	1	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	c0006	1845	1	0	1	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	c0007	1845	1	0	0	1	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	c0008	1845	1	0	1	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	c0009	1845	1	0	0	1	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2IP_chr1_84638706_84695461	0/0	c0010	1845	1	1	0	0	0	0	copy fasta	SSX2IP	chr1	84638706	84695461
SSX2_chrX_52691896_52712178	0/0	c0001	567	82	19	22	27	2	12	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	c0002	567	12	3	3	3	1	2	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	c0003	567	2	0	0	2	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	c0004	567	1	1	0	0	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX2_chrX_52691896_52712178	0/0	c0005	568	1	1	0	0	0	0	copy fasta	SSX2	chrX	52691896	52712178
SSX3_chrX_48341427_48361703	1/1	c0001	567	314	62	59	145	12	34	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	c0002	567	12	11	1	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	c0003	567	3	3	0	0	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	c0004	567	1	0	0	0	1	0	copy fasta	SSX3	chrX	48341427	48361703
SSX3_chrX_48341427_48361703	0/0	c0005	566	1	0	0	1	0	0	copy fasta	SSX3	chrX	48341427	48361703
SSX4B_chrX_48397082_48416960	0/0	c0001	567	177	43	29	72	8	25	copy fasta	SSX4B	chrX	48397082	48416960
SSX4B_chrX_48397082_48416960	0/0	c0002	567	2	1	1	0	0	0	copy fasta	SSX4B	chrX	48397082	48416960
SSX4B_chrX_48397082_48416960	0/0	c0003	567	1	1	0	0	0	0	copy fasta	SSX4B	chrX	48397082	48416960
SSX4_chrX_48378539_48398347	0/0	c0001	567	93	31	16	28	3	15	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	c0002	567	8	1	1	5	1	0	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	c0003	567	1	0	0	1	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	c0004	568	1	0	0	1	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	c0005	567	1	0	1	0	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX5_chrX_48181220_48201795	0/1	c0001	567	274	39	51	143	8	32	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	1/0	c0002	567	27	22	4	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	c0003	567	20	9	3	8	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	c0004	567	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	c0005	567	1	0	0	0	1	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	c0006	566	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	c0007	567	1	0	1	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	c0008	567	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX7_chrX_52639061_52659900	1/1	c0001	567	277	73	49	118	11	24	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	c0002	567	16	0	5	7	2	2	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	c0003	567	5	0	4	0	0	1	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	c0004	567	2	0	0	0	0	2	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	c0005	567	1	0	0	0	0	1	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	c0006	566	1	0	0	1	0	0	copy fasta	SSX7	chrX	52639061	52659900