JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TP53INP2_chr20_34699344_34718436	0/0	c0002	663	2	1	1	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	c0003	663	1	0	0	1	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53RK_chr20_46679365_46694444	1/1	c0001	762	286	73	49	122	10	30	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	c0002	762	99	5	14	65	0	15	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	c0003	762	13	1	7	0	4	1	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	c0004	762	2	0	0	2	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	c0005	762	2	2	0	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	c0006	762	2	0	0	0	2	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	c0007	762	1	1	0	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	c0008	762	1	0	0	1	0	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53TG3B_chr16_33355841_33368478	0/0	c0001	375	46	10	10	16	4	6	copy fasta	TP53TG3B	chr16	33355841	33368478
TP53TG3C_chr16_33189226_33201858	0/0	c0001	375	12	6	4	0	2	0	copy fasta	TP53TG3C	chr16	33189226	33201858
TP53TG3D_chr16_32248286_32260928	0/0	c0001	375	127	8	42	60	10	7	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	c0002	375	56	2	13	35	2	4	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	c0003	375	4	2	0	1	0	1	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	c0004	375	2	2	0	0	0	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3D_chr16_32248286_32260928	0/0	c0005	375	1	0	1	0	0	0	copy fasta	TP53TG3D	chr16	32248286	32260928
TP53TG3E_chr16_33299306_33311945	0/0	c0001	375	41	12	14	6	5	4	copy fasta	TP53TG3E	chr16	33299306	33311945
TP53TG3E_chr16_33299306_33311945	0/0	c0002	375	1	0	0	0	1	0	copy fasta	TP53TG3E	chr16	33299306	33311945
TP53TG3F_chr16_33454612_33467249	0/0	c0001	375	36	10	2	14	0	10	copy fasta	TP53TG3F	chr16	33454612	33467249
TP53TG3_chr16_32668530_32681165	0/0	c0001	375	252	45	38	125	8	36	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	c0002	375	4	0	4	0	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG3_chr16_32668530_32681165	0/0	c0003	375	2	1	0	1	0	0	copy fasta	TP53TG3	chr16	32668530	32681165
TP53TG5_chr20_45367557_45383325	1/0	c0001	873	157	55	26	63	5	7	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/1	c0002	870	123	19	21	58	5	19	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	c0003	873	90	6	11	56	2	15	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	c0004	873	8	1	7	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	c0005	873	6	5	1	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	c0006	870	4	0	0	4	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	c0007	873	1	1	0	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	c0008	873	1	0	0	0	0	1	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	c0009	873	1	0	0	1	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53TG5_chr20_45367557_45383325	0/0	c0010	873	1	1	0	0	0	0	copy fasta	TP53TG5	chr20	45367557	45383325
TP53_chr17_7663421_7692490	1/0	c0001	1182	179	57	27	62	7	25	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/1	c0002	1182	176	31	47	68	10	19	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	c0003	1182	2	0	0	2	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	c0004	1182	2	0	2	0	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	c0005	1182	1	0	0	1	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	c0006	1182	1	0	0	1	0	0	copy fasta	TP53	chr17	7663421	7692490
TP53_chr17_7663421_7692490	0/0	c0007	1182	1	0	0	0	1	0	copy fasta	TP53	chr17	7663421	7692490
TP63_chr3_189626389_189902276	1/1	c0001	2043	301	88	60	106	10	35	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	c0002	2043	8	0	0	7	0	1	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	c0003	2043	2	2	0	0	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189626389_189902276	0/0	c0004	2043	1	0	0	1	0	0	copy fasta	TP63	chr3	189626389	189902276
TP63_chr3_189784659_189902276	1/1	c0001	1761	385	96	74	160	12	41	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	c0002	1761	9	0	0	8	0	1	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	c0003	1761	2	2	0	0	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	c0004	1761	1	0	0	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP63_chr3_189784659_189902276	0/0	c0005	1761	1	0	0	1	0	0	copy fasta	TP63	chr3	189784659	189902276
TP73_chr1_3647516_3741201	0/1	c0001	1911	199	47	47	57	17	30	copy fasta	TP73	chr1	3647516	3741201