JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP14_chr18_153557_219629	0/0	c0005	1485	1	0	0	0	0	1	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	c0006	1485	1	0	0	1	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	c0007	1485	1	0	1	0	0	0	copy fasta	USP14	chr18	153557	219629
USP15_chr12_62255404_62421389	1/0	c0001	2946	133	30	25	62	2	13	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/1	c0002	2946	104	40	14	33	2	14	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	c0003	2946	84	2	20	53	5	4	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	c0004	2946	17	8	8	0	1	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	c0005	2946	5	2	2	0	0	1	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	c0006	2946	2	2	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	c0007	2946	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	c0008	2946	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	c0009	2946	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP16_chr21_29019668_29059488	1/1	c0001	2472	336	88	56	164	8	18	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0002	2472	60	4	16	27	3	10	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0003	2472	11	1	3	0	0	7	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0004	2472	3	0	0	3	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0005	2472	2	1	1	0	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0006	2472	2	0	0	0	0	2	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0007	2472	2	2	0	0	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0008	2472	2	0	0	2	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0009	2472	1	0	0	1	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0010	2472	1	0	0	0	1	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0011	2472	1	1	0	0	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0012	2472	1	0	0	1	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0013	2472	1	1	0	0	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0014	2472	1	0	0	0	0	1	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0015	2472	1	0	0	1	0	0	copy fasta	USP16	chr21	29019668	29059488
USP16_chr21_29019668_29059488	0/0	c0016	2472	1	0	0	1	0	0	copy fasta	USP16	chr21	29019668	29059488
USP17L10_chr4_9205657_9217249	1/0	c0001	1593	4	0	2	1	0	0	copy fasta	USP17L10	chr4	9205657	9217249
USP17L10_chr4_9205657_9217249	0/0	c0002	1593	1	0	0	1	0	0	copy fasta	USP17L10	chr4	9205657	9217249
USP17L11_chr4_9210405_9221997	0/0	c0001	1593	1	0	1	0	0	0	copy fasta	USP17L11	chr4	9210405	9221997
USP17L11_chr4_9210405_9221997	0/0	c0002	1593	1	0	1	0	0	0	copy fasta	USP17L11	chr4	9210405	9221997
USP17L12_chr4_9215152_9226744	0/0	c0001	1593	3	0	1	2	0	0	copy fasta	USP17L12	chr4	9215152	9226744
USP17L12_chr4_9215152_9226744	0/0	c0002	1593	2	0	1	1	0	0	copy fasta	USP17L12	chr4	9215152	9226744
USP17L12_chr4_9215152_9226744	0/0	c0003	1593	1	0	0	1	0	0	copy fasta	USP17L12	chr4	9215152	9226744
USP17L13_chr4_9219896_9231488	0/0	c0001	1593	4	0	4	0	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L13_chr4_9219896_9231488	0/0	c0002	1593	2	0	2	0	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L13_chr4_9219896_9231488	0/0	c0003	1593	1	0	0	1	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L13_chr4_9219896_9231488	1/0	c0004	1593	1	0	0	0	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L13_chr4_9219896_9231488	0/0	c0005	1593	1	0	0	1	0	0	copy fasta	USP17L13	chr4	9219896	9231488
USP17L15_chr4_9229385_9241046	0/0	c0001	1662	11	0	3	4	2	2	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	c0002	1662	8	0	4	3	1	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	c0003	1662	7	3	0	3	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	c0004	1662	4	0	2	1	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	c0005	1662	4	1	0	1	1	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	c0006	1662	3	0	0	2	0	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	c0007	1662	3	0	1	1	1	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	c0008	1662	3	0	1	0	1	1	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	c0009	1662	3	0	1	2	0	0	copy fasta	USP17L15	chr4	9229385	9241046
USP17L15_chr4_9229385_9241046	0/0	c0010	1662	2	2	0	0	0	0	copy fasta	USP17L15	chr4	9229385	9241046