JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
XAGE2_chrX_52364021_52380680	0/0	g0017	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0018	1	1	0	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0019	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0020	1	0	0	0	0	1	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0021	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0022	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0023	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0024	1	1	0	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0025	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0026	1	0	0	0	0	1	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0027	1	0	1	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0028	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0029	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0030	1	1	0	0	0	0	XAGE2	chrX	52364021	52380680
XAGE2_chrX_52364021_52380680	0/0	g0031	1	0	0	1	0	0	XAGE2	chrX	52364021	52380680
XAGE3_chrX_52857528_52873083	0/0	g0001	141	6	28	83	4	20	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	1/0	g0002	68	33	6	22	2	4	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0003	39	0	3	34	0	2	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0004	17	17	0	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/1	g0005	16	3	5	3	3	1	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0006	9	4	4	0	0	1	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0007	5	4	1	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0008	5	4	1	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0009	3	0	0	3	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0010	2	0	1	0	1	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0011	2	0	0	1	1	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0012	2	0	0	0	0	2	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0013	1	0	0	0	0	1	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0014	1	0	0	1	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0015	1	0	0	1	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0016	1	1	0	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0017	1	0	0	1	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0018	1	1	0	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0019	1	0	0	1	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0020	1	1	0	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0021	1	0	0	0	0	1	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0022	1	0	0	1	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0023	1	0	1	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0024	1	1	0	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0025	1	1	0	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0026	1	1	0	0	0	0	XAGE3	chrX	52857528	52873083
XAGE3_chrX_52857528_52873083	0/0	g0027	1	1	0	0	0	0	XAGE3	chrX	52857528	52873083
XAGE5_chrX_52806287_52823301	0/1	g0001	183	37	29	89	8	19	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0002	22	18	4	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0003	14	0	4	6	2	2	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0004	4	0	0	4	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0005	4	0	0	4	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0006	4	0	4	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0007	2	2	0	0	0	0	XAGE5	chrX	52806287	52823301
XAGE5_chrX_52806287_52823301	0/0	g0008	2	0	0	0	0	2	XAGE5	chrX	52806287	52823301