JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CT47A5_chrX_120958026_120971348	0/0	t0007	432	1	1	0	0	0	0	copy fasta	CT47A5	chrX	120958026	120971348
CT47A6_chrX_120953165_120966487	0/0	t0001	432	78	18	27	16	5	12	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	t0002	432	22	10	5	5	1	1	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	t0003	432	5	1	1	0	1	2	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	t0004	431	1	0	0	0	1	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	t0005	431	1	1	0	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	t0006	433	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	t0007	430	1	0	0	1	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A6_chrX_120953165_120966487	0/0	t0008	432	1	0	1	0	0	0	copy fasta	CT47A6	chrX	120953165	120966487
CT47A7_chrX_120948282_120961600	0/0	t0001	428	14	2	1	4	2	5	copy fasta	CT47A7	chrX	120948282	120961600
CT47A7_chrX_120948282_120961600	1/0	t0002	428	5	0	0	2	1	1	copy fasta	CT47A7	chrX	120948282	120961600
CT47A8_chrX_120943422_120956744	0/0	t0001	432	7	0	0	4	1	2	copy fasta	CT47A8	chrX	120943422	120956744
CT47A9_chrX_120938561_120951883	0/0	t0001	432	8	0	0	8	0	0	copy fasta	CT47A9	chrX	120938561	120951883
CT47C1_chrX_119067993_119081765	0/1	t0001	798	184	49	27	75	11	21	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	1/0	t0002	798	114	21	17	66	0	9	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	t0003	798	6	6	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	t0004	798	4	2	2	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	t0005	798	1	1	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	t0006	798	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT55_chrX_135151540_135176398	1/1	t0001	647	251	64	46	108	7	24	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	t0002	647	7	6	1	0	0	0	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	t0003	647	3	0	2	0	1	0	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	t0004	647	3	0	0	3	0	0	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	t0005	648	2	0	1	0	0	1	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	t0006	647	1	0	0	0	1	0	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	t0007	647	1	0	1	0	0	0	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	t0008	646	1	0	1	0	0	0	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	t0009	648	1	0	0	0	0	1	copy fasta	CT55	chrX	135151540	135176398
CT83_chrX_116456686_116467976	1/1	t0001	176	339	80	50	162	11	34	copy fasta	CT83	chrX	116456686	116467976
CT83_chrX_116456686_116467976	0/0	t0002	176	1	0	0	1	0	0	copy fasta	CT83	chrX	116456686	116467976
CTAG1A_chrX_154580133_154591816	0/0	t0001	227	287	71	60	113	13	30	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	t0002	227	1	1	0	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	t0003	227	1	1	0	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	t0004	227	1	0	1	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	t0005	227	1	1	0	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	t0006	227	1	0	1	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	t0007	229	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1B_chrX_154612609_154624282	0/0	t0000	0	1	1	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	t0001	217	247	65	51	103	5	23	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	t0002	153	1	1	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	t0003	215	1	0	0	1	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	t0004	217	1	1	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	t0005	216	1	0	0	1	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	t0006	217	1	0	1	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	t0007	216	1	0	0	1	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG2_chrX_154646977_154658579	1/1	t0001	217	314	74	62	129	13	34	copy fasta	CTAG2	chrX	154646977	154658579
CTAGE15_chr7_143566801_143579387	0/0	t0001	254	178	30	43	80	4	21	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	t0002	262	41	1	1	30	4	5	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	t0003	254	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE1_chr18_22408599_22422915	1/1	t0001	2080	191	29	41	90	5	24	copy fasta	CTAGE1	chr18	22408599	22422915